Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1102
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020     29   2.1  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     28   5.0  
10_08_0041 - 14374684-14377339,14377371-14378233                       27   6.5  

>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
          Length = 722

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 269 MRFFLSSHNTRYHKELLIFICSVNHDTTKFDVCVTVPQFPYKPCGHLSH 123
           + F  + ++ +YH E + F+ S  HD T+       P+F Y+  G L H
Sbjct: 421 INFDFNVNSPKYHGESIHFLSSQGHDLTQHSKRGVTPEFVYE--GLLRH 467


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 429 SPVNPNFT*VGLEFVHSFKQ*KKAPFSVRAIERFFCSSHNPD 304
           S  +PN   +G E VH     K  P + RA+    C+  N D
Sbjct: 351 SSAHPNLEMIGKEIVHKL---KGLPLAARALGSLLCAKDNED 389


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 269 MRFFLSSHNTRYHKELLIFICSVNHDTTKFDVCVTVPQFPYKPCGHLSH 123
           + F  + ++ +YH + + F+ S  HD T+       P+F Y+  G L H
Sbjct: 738 INFDFNVNSPKYHGKSIDFLSSQGHDLTQHSKRGVAPEFVYE--GLLRH 784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,141
Number of Sequences: 37544
Number of extensions: 236362
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)