Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1102
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT) id...    29   1.8  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    29   2.4  
At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identic...    27   7.3  
At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identi...    27   9.6  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    27   9.6  

>At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT)
           identical to SP|Q9FIT4 BROTHER of FT and TFL1 protein
           {Arabidopsis thaliana}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 177

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 451 HFLCP*IVSGKPQLHIGGPRVRSFF 377
           H L P ++  KP++ IGG  +RSFF
Sbjct: 41  HELAPSLLLSKPRVEIGGQDLRSFF 65


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 284 FKFKTMRFFLSSHNTRYHKELLIFICSVNHDTTKFDVCVTVPQFPYKPCGHLS 126
           F FK     +S+ + + +   +  IC V  D T + VC+ V +   +P G LS
Sbjct: 446 FSFKCQ---ISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGVLS 495


>At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identical
           to purple acid phosphatase GI:20257491 from [Arabidopsis
           thaliana]
          Length = 427

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 398 PTYVKLGFTGDY--LRTKEMGPPPQISLF*KKKRGGG 502
           P Y+ +G  G+   L TK   P P+ISLF +   G G
Sbjct: 350 PVYINIGDGGNLEGLATKYRDPNPEISLFREASFGHG 386


>At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identical
           go SP|P93003 TERMINAL FLOWER 1 protein {Arabidopsis
           thaliana}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 177

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 451 HFLCP*IVSGKPQLHIGGPRVRSFF 377
           H L P  VS KP++ I G  +RSFF
Sbjct: 44  HELFPSSVSSKPRVEIHGGDLRSFF 68


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 112 HCDVTNERTDEVTLIHRYLLLNV-IIIIFRSIGV 14
           H  VTN+ +DEV    RY  + +  I +FRSI +
Sbjct: 262 HVSVTNKLSDEVVSFSRYFSVTLPDIPLFRSIDI 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,096,969
Number of Sequences: 28952
Number of extensions: 192446
Number of successful extensions: 298
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)