Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1101
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 42 3e-05
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 38 5e-04
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 34 0.011
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 30 0.18
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 27 1.3
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 1.7
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 1.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 2.3
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 25 5.2
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 5.2
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 5.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 6.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.9
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 25 6.9
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 24 9.1
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 42.3 bits (95), Expect = 3e-05
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +1
Query: 286 VPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFG 417
+P+S++ + L + K +Q+ P +GF V L+ + ++FEWEV I G
Sbjct: 1 MPSSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIG 44
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 38.3 bits (85), Expect = 5e-04
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 274 MSNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFG 417
M++ P+SS R L EY L+E P+ RV L+ +DNLF W G
Sbjct: 1 MASASPSSS--RRLTKEYSDLREHPIPDIRVNLV-DDNLFHWACTALG 45
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.9 bits (74), Expect = 0.011
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 301 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPRPD-TPF 441
ALR L EYK L E +G ED+ F W+ I G PD TPF
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQG---PDGTPF 50
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 29.9 bits (64), Expect = 0.18
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 343 EPVEGFRVKLLGEDNLFEWEVAIFGEP 423
E ++G +K + +WEVAIFGEP
Sbjct: 186 EEIDGIGMKTVANKLNADWEVAIFGEP 212
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 1.3
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -3
Query: 353 STGSSCRLLYSNAKALRAELVGTVLDIVSYVFI---NLHYLSKQNYINISLWNSLCCPRI 183
++ SS Y + +VG VL I++YVF + + N IN+ L ++ C +
Sbjct: 192 TSDSSSSKFYLIGSTVGMYVVGLVLTILTYVFFCASSCSFNQAINTINLLLCIAVSCLSV 251
Query: 182 HQAFQ 168
H Q
Sbjct: 252 HPTIQ 256
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 274 MSNTVPTS-SALRALALEYKSLQEEPVEGFR 363
M ++VP + ++L E+ +L E+P+EGFR
Sbjct: 22 MFHSVPQNKNSLSVCVAEFTALSEKPLEGFR 52
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 126 LCLPKFLVRCYCDELKCLVDTWTA 197
LC+ + LV C C C+V +W A
Sbjct: 105 LCVNENLVVCGCSNSSCIVYSWNA 128
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 416 PKIATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKA 309
P + S +R SS +LTR+PS S L N +A
Sbjct: 90 PYLKGSFDDRFSSTHSLTRQPSPRSPLTPLKGNTRA 125
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 352 EGFRVKLLGEDNLFEWEVAIFGEPRPDTPF 441
EGF+ K +G +L +W++++ E + F
Sbjct: 242 EGFQTKKVGTASLPDWQISMHNEASKNIDF 271
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 5.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 413 KIATSHSNRLSSPSNLTRKPSTGSSCRLLYSNA 315
+I + +++R +S S+ T T SS RLLY+NA
Sbjct: 20 EIGSMYASRDTSTSSFTNP--TDSSTRLLYNNA 50
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 89 CVTRTCGCCSIDAMFTKISSSLLL*RVEMPGGYVDSI-KSSKVICLYN 229
C TC C+ID MF+ I +S P ++ + K SK +C Y+
Sbjct: 183 CKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYS 230
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 24.6 bits (51), Expect = 6.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 410 IATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAK 312
+++SHS+ L+ P + KPS S+ ++ ++K
Sbjct: 115 LSSSHSSILNGPLDSLSKPSVPSNFNSMFPSSK 147
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 323 SNAKALRAELVGTVLDIVSYVFINLHYLSKQNYINI 216
S+A L AEL+ +LD + +NL+ S N + I
Sbjct: 42 SDASQLYAELIPLLLDFLRNTEVNLYRNSSVNELKI 77
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 174 ISTRHNNNELEILVNIASILQHPQVRV 94
+STR NNEL IL N ++ Q P+ R+
Sbjct: 119 LSTRFINNELTILENPINLSQ-PKTRI 144
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 9.1
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = -1
Query: 145 RNFGKHSIDTAASTSTCHTLQTSTLKSLLII 53
+NFG + + T + STC +K + ++
Sbjct: 258 KNFGSNYLATVSRDSTCRVFDLRAMKDVRVL 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,194
Number of Sequences: 5004
Number of extensions: 39843
Number of successful extensions: 92
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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