Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1101
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1289 - 36010924-36011001,36011441-36011518,36012321-360124... 42 2e-04
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733... 42 3e-04
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337... 31 0.31
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 29 2.2
02_01_0559 - 4113937-4114113,4115305-4115853 28 2.9
04_04_0207 + 23602065-23604315,23604611-23605116 28 3.9
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 28 3.9
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 28 3.9
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 27 5.1
06_03_1005 + 26837047-26837093,26837644-26837731,26837854-268379... 27 5.1
10_08_0604 + 19152363-19152731,19152773-19153514,19153926-191540... 27 6.8
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 27 6.8
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 27 6.8
09_06_0081 + 20745627-20748144,20748211-20748308 27 9.0
03_02_0288 - 7106736-7107555,7108028-7108584,7108720-7108937,710... 27 9.0
>01_06_1289 -
36010924-36011001,36011441-36011518,36012321-36012421,
36012506-36012603,36016213-36016315,36016435-36016486
Length = 169
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 274 MSNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEP 423
M+ T+ +S L L + K L + PV+GF L+ + N+FEW+V I G P
Sbjct: 1 MAATISQASLL--LQKQLKDLAKHPVDGFSAGLVDDSNVFEWQVTIIGPP 48
>05_05_0110 +
22470869-22470920,22471044-22471146,22473261-22473358,
22473430-22473530,22474052-22474129,22474578-22474655
Length = 169
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 295 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEP 423
S A L + K L + PV+GF L+ + N+FEW+V I G P
Sbjct: 6 SQASLLLQKQLKDLAKNPVDGFSAGLVDDSNVFEWQVTIIGPP 48
>03_02_0755 +
10932897-10933010,10933446-10933577,10933666-10933750,
10934668-10934831,10934911-10935357
Length = 313
Score = 31.5 bits (68), Expect = 0.31
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 301 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPRPDTPF 441
A++ + E K +Q P F L ED +FEW+ AI G PR D+ F
Sbjct: 13 AVKRILQEVKEMQSNPSPDFMAMPLEED-IFEWQFAILG-PR-DSEF 56
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 225 YKHITLELFMLSTYPPGISTRHNNNELEILVNIA-SILQHPQV 100
+ + LE F ++ PG++++ +N+ +I NIA S+LQ QV
Sbjct: 1864 WSRLILEEFAVALTAPGLTSKSFSNQQKIAANIALSLLQLSQV 1906
>02_01_0559 - 4113937-4114113,4115305-4115853
Length = 241
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 343 EPVEGFRVKLLGEDNLFEWEVAIFGEPRPDTP 438
EP E F+ D L+EWE ++ E + +TP
Sbjct: 205 EPFELFKSHKESLDRLYEWEKRLYEEVKVETP 236
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 314 KALRAELVGTVLDIVSYVFINLHYLSKQNYINISLWNSLCCPRIHQAFQLVTI 156
KA R+ L L+ Y+ +H+ KQN+I I++ + R H+ L +
Sbjct: 732 KAYRSSLASD-LNYSCYIAPVIHFTQKQNFIRIAISTAELHSRFHKTLALCAL 783
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 314 KALRAELVGT-----VLDIVSYVFINLHYLSKQNYINISLWNSLCCPRIHQAF 171
K LRAEL T ++ +SY NLH L KQ W+SL H AF
Sbjct: 2165 KQLRAELSDTTANNLIVQNLSYSVCNLHTLVKQTTSPHQFWSSLSSSD-HSAF 2216
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 210 LELFMLSTYPPGISTRHNNNELEILVNIASILQH 109
L + +LSTYP EL++L+NIAS+L++
Sbjct: 367 LSILLLSTYP--FMANLYGLELKVLINIASLLKN 398
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 347 GSSCRLLYSNAKALRA-ELVGTVLDIVSYVFINLHYLSKQNYINIS 213
G S ++S +LR +L T +D +S LH L + Y+N+S
Sbjct: 525 GKSLEFIFSKLTSLRVLDLRHTQVDNISTYLKKLHKLKQLRYLNLS 570
>06_03_1005 +
26837047-26837093,26837644-26837731,26837854-26837998,
26838150-26838227,26838323-26838435,26838538-26838641,
26838804-26839119
Length = 296
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 298 SALRALALEYKSLQEEPVEGFRVKLLGED 384
+ +R LA E KSL E P EG +V + +D
Sbjct: 54 NVVRQLAKELKSLDESPPEGIKVIVNDDD 82
>10_08_0604 +
19152363-19152731,19152773-19153514,19153926-19154005,
19154155-19154487
Length = 507
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 216 YVYIILFR*VVKVNKYITDNV*HCSNEFSPQGFSVGVQESAR 341
Y Y+ L + +K + Y TD++ S EFSP+ F G +E R
Sbjct: 380 YRYVFL-KTNLKTDSY-TDDIWTSSEEFSPERFMEGGEEGVR 419
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 431 SGRGSPKIATSHSNRLSSPSNLTRKP 354
SG+G+P H +S+P N T +P
Sbjct: 1378 SGQGAPNAVNVHPGAMSAPGNPTLRP 1403
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = -2
Query: 288 NSVRHCQLCIY*PSLPI*TKLYKHITLELFMLSTYPPGISTRHNNNELEILV 133
N++R +C P +P TK++++ITL + PG+ ++N++E +I++
Sbjct: 334 NTLRSKSVCKVAP-IPGETKVWQYITLTKRIFLIDCPGVVYQNNDSETDIVL 384
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 419 SPKIATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAEL 294
+P +AT + SSPS + R PS + R L + +ALR +
Sbjct: 548 APPVATPPDSA-SSPSTVPRMPSAPLALRALAPHLRALRVSV 588
>03_02_0288 -
7106736-7107555,7108028-7108584,7108720-7108937,
7109223-7109322,7110776-7110856
Length = 591
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 359 KPSTGS--SCRLLYSNAKALRAELVGTVLDIVSYVFINLHYLSKQNYINISLWNSLC 195
K +TG+ +C + + R G ++V+Y+ NLH + + N++ W C
Sbjct: 47 KHATGNWRACFFILGDECCERLAYYGIAKNLVTYLKTNLHQGNLEAARNVTTWQGTC 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,022
Number of Sequences: 37544
Number of extensions: 238628
Number of successful extensions: 550
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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