Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1101
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      62   2e-10
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_35686| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-32)                 28   3.0  
SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)               28   4.0  
SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8)                     27   9.2  
SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035)               27   9.2  
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 29/43 (67%), Positives = 33/43 (76%)
 Frame = +1

Query: 295  SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEP 423
            SSA+RAL LE K L EEPVEGF V++  E N FEW+VAIFG P
Sbjct: 1123 SSAVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPP 1165


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +1

Query: 334 LQEEPVEGFRVKLLGEDNLFEWEVAIFGEP 423
           LQ++PVEGF   L  +++L++WE+ + G P
Sbjct: 344 LQKKPVEGFSAGLFDDEDLYKWEIMVVGPP 373


>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +1

Query: 295 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPRPDTPF 441
           S A++ L  E K L+    E +  + L EDNLFEW   + G   PDT F
Sbjct: 9   SPAVKRLMREAKELRNA-TELYHAQPL-EDNLFEWHFTVRGP--PDTEF 53


>SB_35686| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-32)
          Length = 340

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 323 SNAKALRAELVGTVLDIVSYVFINLHYLSKQNYINISLWNS 201
           +N   LR   V T+L IV + FI   Y     + +I+LWNS
Sbjct: 226 ANRDVLRVVFVITILFIVCWGFIYNIYFIGHFFDDITLWNS 266


>SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)
          Length = 76

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 400 PTQIDCPLLAI*HGNLLQVLLADSCTPTLKP 308
           P  +D   LAI H  L    + D C PT +P
Sbjct: 3   PCDLDAAALAIRHALLTAATMCDRCWPTWRP 33


>SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8)
          Length = 597

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 214 HFGTLYAVHVSTRHFNSSQ*QRTRNFGKHSIDTAASTSTCHTLQTSTLKSLLIIYVEK*T 35
           HF T  AV VS  H N+SQ  +  ++   +   A   S  H   +   K++ + Y+   T
Sbjct: 97  HFNTSQAVKVSCMHLNTSQAVKV-SYMHLNTSQAIRVSYMHLNTSQATKAVNVSYMHLNT 155

Query: 34  KQ 29
            Q
Sbjct: 156 PQ 157


>SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035)
          Length = 437

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 222 KHITLELFMLSTYPPGISTRHNN-NELEILVNIASILQHPQVRVTHFKRQPLNLC 61
           ++I L+L  LS+    + + H + N+L +LVN A ++  P         Q + +C
Sbjct: 28  RYIHLDLSDLSSVREFVKSFHQSENQLNVLVNNAGVMLTPYALTKDGFEQQIGIC 82


>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 431 SGRGSPKIATSHSNRLSSPSNLT 363
           SGRG+P   TS S  L++P N T
Sbjct: 340 SGRGTPDSNTSTSTALNTPENRT 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,758,864
Number of Sequences: 59808
Number of extensions: 299355
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)