Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1101
(445 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 56 1e-08
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 47 7e-06
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 40 6e-04
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 36 0.013
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 36 0.013
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 33 0.093
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 32 0.16
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 0.66
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m... 28 2.7
AF039047-14|AAM15589.1| 978|Caenorhabditis elegans Human mlk (m... 28 2.7
U00048-3|AAB53827.3| 315|Caenorhabditis elegans Nematode astaci... 28 3.5
Z71186-1|CAA94913.1| 301|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 27 4.6
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 27 4.6
AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical ... 27 4.6
Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +1
Query: 277 SNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPR 426
S +S ALRAL +E K+LQ +PVEGF + + EDNLF W V I+G P+
Sbjct: 3 SKASTSSGALRALTMELKNLQSQPVEGFTID-VNEDNLFVWTVGIYGPPK 51
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 46.8 bits (106), Expect = 7e-06
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +1
Query: 292 TSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPRPDTPFF 444
+SSA+R L +Y L ++PV+G + L EDN+ EW + G PDTPF+
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKA-LPNEDNILEWHYCLRGS--PDTPFY 64
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 40.3 bits (90), Expect = 6e-04
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +1
Query: 301 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFG 417
AL+ L EYK L P EG + EDN FEWE I G
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITG 43
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 35.9 bits (79), Expect = 0.013
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 292 TSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPRPDTPF 441
T+ + R L ++K LQE+P G EDN+ WE IFG P+ +TPF
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFG-PQ-ETPF 48
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 35.9 bits (79), Expect = 0.013
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 292 TSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPRPDTPF 441
T+ + R L ++K LQE+P G EDN+ WE IFG P+ +TPF
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFG-PQ-ETPF 48
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 33.1 bits (72), Expect = 0.093
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 313 LALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEP 423
L + ++ PV+GF L+ ++++++WEV + G P
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPP 44
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 32.3 bits (70), Expect = 0.16
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 301 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPRPDTPF 441
AL+ L +Y+ L +EPV + L E N+ EW I G P+ TP+
Sbjct: 9 ALQRLKKDYQRLLKEPVPFMKAAPL-ETNILEWRYIIIGAPK--TPY 52
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 30.3 bits (65), Expect = 0.66
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 410 IATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELV 291
+ +SN + SP+N +TG+SC +L+S+ K A V
Sbjct: 12 VGQPYSNLVISPNNRILATTTGASCEVLFSDKKGNDARRV 51
>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform a
protein.
Length = 1040
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -3
Query: 347 GSSCRLLYSNAKALRAELVGTVLDIVSYVFINLHYLSKQNYINISL 210
GSS R + N + A +G ++D + V + YL+KQ Y++ L
Sbjct: 253 GSSLRNVCRNLNSDAAIPLGVLIDWATQVAEGMEYLTKQGYVHRDL 298
>AF039047-14|AAM15589.1| 978|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform b
protein.
Length = 978
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -3
Query: 347 GSSCRLLYSNAKALRAELVGTVLDIVSYVFINLHYLSKQNYINISL 210
GSS R + N + A +G ++D + V + YL+KQ Y++ L
Sbjct: 253 GSSLRNVCRNLNSDAAIPLGVLIDWATQVAEGMEYLTKQGYVHRDL 298
>U00048-3|AAB53827.3| 315|Caenorhabditis elegans Nematode astacin
protease protein 4 protein.
Length = 315
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 180 PGISTRHNNNELEILVNIASILQHPQV 100
PG+S +NNN +N SI+ HPQV
Sbjct: 290 PGVSGNNNNNNNN-QINSNSIVNHPQV 315
>Z71186-1|CAA94913.1| 301|Caenorhabditis elegans Hypothetical
protein F23D12.1 protein.
Length = 301
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 132 LPKFLVRCYCDELKCLVDTW 191
+P F+ R C L CLVD W
Sbjct: 129 IPHFIFRIICLSLICLVDAW 148
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 362 RKPSTGSSCRLLYSNAKALRAELVGTV 282
R PSTG+ CR N + LR E + T+
Sbjct: 74 RSPSTGAICRGTVENMRQLRLERMKTI 100
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 274 MSNTVPTSSA-LRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFG 417
MS T +A +R L E L++ P E + + + EDNLFEW I G
Sbjct: 1 MSEQYNTKNAGVRRLMKEAMELRQ-PTEMYHAQPM-EDNLFEWHFTIRG 47
>AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical
protein F25E5.8b protein.
Length = 176
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 398 HSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELVGTVLDIVSYVFI 255
HS + S S RK STGS C S + + + VSY+F+
Sbjct: 124 HSKQNSGASTPARKNSTGSECPC--SKQEQCHKHSINITVGAVSYLFL 169
>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
protein F56A8.1 protein.
Length = 1049
Score = 26.6 bits (56), Expect = 8.1
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = -3
Query: 398 HSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELVGTVLDIVSYVFINLHYLSKQNYIN 219
H R+ + + + S+ +++ SN K ++ + Y+ + +H++ IN
Sbjct: 750 HRTRIKKRTRIAKLAWIASNQKMIKSNRKKEKSNKKH--FTVAEYIIL-VHFIIITKIIN 806
Query: 218 ISLWNSLCCPRIHQAFQLVTITT 150
+ SL PR+ ++FQLV + T
Sbjct: 807 EFKF-SLSQPRMRRSFQLVLLLT 828
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 337 QEEPVEGFRVKLLGEDNLFEWEVAIFGE 420
+ PVE F VK E LF W++ +F +
Sbjct: 884 ESRPVESFIVKKDNECKLFVWKLILFNQ 911
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 337 QEEPVEGFRVKLLGEDNLFEWEVAIFGE 420
+ PVE F VK E LF W++ +F +
Sbjct: 884 ESRPVESFIVKKDNECKLFVWKLILFNQ 911
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 337 QEEPVEGFRVKLLGEDNLFEWEVAIFGE 420
+ PVE F VK E LF W++ +F +
Sbjct: 884 ESRPVESFIVKKDNECKLFVWKLILFNQ 911
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 337 QEEPVEGFRVKLLGEDNLFEWEVAIFGE 420
+ PVE F VK E LF W++ +F +
Sbjct: 884 ESRPVESFIVKKDNECKLFVWKLILFNQ 911
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,362
Number of Sequences: 27780
Number of extensions: 224028
Number of successful extensions: 698
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -