Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1101
(445 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 23 1.1
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 23 2.0
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 23 2.0
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 23 2.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 3.5
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 3.5
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 3.5
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 21 6.1
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 21 6.1
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 8.0
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 21 8.0
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 23.4 bits (48), Expect = 1.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 380 RTIYLSGKWQSSGNPGRIHL 439
+ + L+ K +SSG GR+H+
Sbjct: 391 KDVELANKMESSGMAGRVHI 410
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 22.6 bits (46), Expect = 2.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 398 HSNRLSSPSNLTRKPSTGSSCR 333
H N+ S P+ L R T + CR
Sbjct: 39 HGNKSSGPNELGRFKHTDACCR 60
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 22.6 bits (46), Expect = 2.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 398 HSNRLSSPSNLTRKPSTGSSCR 333
H N+ S P+ L R T + CR
Sbjct: 44 HGNKSSGPNELGRFKHTDACCR 65
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 22.6 bits (46), Expect = 2.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 398 HSNRLSSPSNLTRKPSTGSSCR 333
H N+ S P+ L R T + CR
Sbjct: 44 HGNKSSGPNELGRFKHTDACCR 65
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 431 SGRGSPKIATSHSNRLSSPSNLTRKPST-GSS 339
S R S + +SNR S R+PST GSS
Sbjct: 26 SQRSSGSSISRNSNRSESSGYCGRRPSTFGSS 57
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 174 ISTRHNNNELEILVNIASILQHPQVRVTH 88
+S HN N + N+A+ + H Q V H
Sbjct: 675 LSPDHNGNYSCVARNLAAEVSHTQRLVVH 703
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.8 bits (44), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 431 SGRGSPKIATSHSNRLSSPSNLTRKPST-GSS 339
S R S + +SNR S R+PST GSS
Sbjct: 26 SQRSSGSSISRNSNRSESSGYCGRRPSTFGSS 57
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 6.1
Identities = 6/19 (31%), Positives = 15/19 (78%)
Frame = +2
Query: 383 TIYLSGKWQSSGNPGRIHL 439
T+ L+ + +++G PG+I++
Sbjct: 537 TVNLTSRTETTGEPGKINV 555
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 6.1
Identities = 6/19 (31%), Positives = 15/19 (78%)
Frame = +2
Query: 383 TIYLSGKWQSSGNPGRIHL 439
T+ L+ + +++G PG+I++
Sbjct: 537 TVNLTSRTETTGEPGKINV 555
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 20.6 bits (41), Expect = 8.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -3
Query: 425 RGSPKIATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELVGTVLDIVSYVFINLH 246
RG P A + +NLT + R+ N AL EL +V+ VS+ L
Sbjct: 95 RGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLD 154
Query: 245 YLSKQN 228
+ ++N
Sbjct: 155 EIIERN 160
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 20.6 bits (41), Expect = 8.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 128 MFTKISSSLLL*RVEMPGGYVDSIKSSKVIC 220
M T SSS L E+P G V +I + + C
Sbjct: 2 MATAASSSSLEKSYELPDGQVITIGNERFRC 32
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,168
Number of Sequences: 438
Number of extensions: 2720
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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