Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1101
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)...    42   2e-04
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)...    39   0.001
At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative ...    31   0.26 
At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative...    29   1.1  
At2g37400.1 68415.m04586 chloroplast lumen common family protein...    29   1.9  
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ...    27   4.3  
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    27   4.3  

>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
           E2; identical to gi:992706
          Length = 166

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +1

Query: 295 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEP 423
           S A   L  + K L + PV+GF   L+ E N+FEW V I G P
Sbjct: 3   SQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPP 45


>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
           E2; UbcAT3; identical to gi:2129757, S46656
          Length = 167

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 313 LALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEP 423
           L  + K L ++PV+GF   L+ E N+F+W V+I G P
Sbjct: 10  LQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPP 46


>At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative
           similar to Non-Canonical UBiquitin Conjugating Enzyme 1
           (NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus]
           GI:7363050, [Homo sapiens] GI:7362973; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 309

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 301 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFG 417
           A++ +  E K +Q  P + F + L  E+N+FEW+ AI G
Sbjct: 12  AVKRILQEVKEMQANPSDDF-MSLPLEENIFEWQFAIRG 49


>At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative
           similar to zeta-crystallin homolog TED2 from Zinnia
           elegans [gi:531096]; contains Pfam zinc-binding
           dehydrogenase domain PF00107
          Length = 406

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 268 LTMSNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGEPR 426
           L+   TV    AL  +A+E +S +++ V+G RV   G   + +WE    GEP+
Sbjct: 58  LSTRGTVFAVRALSTVAVE-ESSEKKMVKGIRVYEHGGPEVLKWEDVEVGEPK 109


>At2g37400.1 68415.m04586 chloroplast lumen common family protein
           very similar to GI:6729507 (At5g02590) and GI:7413648
           (At3g53560) [Arabidopsis thaliana]
          Length = 333

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 190 HVSTRHFNSSQ*QRTRNFGKHSIDTAASTSTCHTLQTSTLKS 65
           H+S  HF+SS  ++  +F   S+  + S+  C +++ S+ KS
Sbjct: 15  HLSFTHFSSSFPKKPSSFSLRSLPRSTSSFKCISIKASSSKS 56


>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
           similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
           kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
           carrier protein) {Homo sapiens}; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 251

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 277 SNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGED 384
           SN     + ++ LA E KSL E P +G +V +  ED
Sbjct: 3   SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNDED 38


>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -3

Query: 320 NAKALRAELVGTVLDIVSYVFINL---HYLSKQNYINIS 213
           + + LRA ++  +++ +S VFINL    Y++KQ  + IS
Sbjct: 411 DTRLLRAMVIKGIIEPISSVFINLVNSDYIAKQRGVKIS 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,464
Number of Sequences: 28952
Number of extensions: 199927
Number of successful extensions: 494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)