Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1100
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 79 3e-16
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 73 3e-14
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 66 3e-12
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 52 4e-08
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 49 3e-07
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 39 3e-04
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 35 0.007
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 35 0.007
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 33 0.022
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 32 0.050
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 1.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 1.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 1.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 4.4
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 5.8
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 5.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 7.6
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 79.0 bits (186), Expect = 3e-16
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = -1
Query: 407 QVCPMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAIN 255
QV PM QLSDGQR RV+FA+L PH+LLLDEPTN LD++TIDALADA+N
Sbjct: 706 QVIPMGQLSDGQRRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALN 756
Score = 68.1 bits (159), Expect = 6e-13
Identities = 29/55 (52%), Positives = 41/55 (74%)
Frame = -3
Query: 255 HFDGGMVLVSHDFRLINQVANEIWICENGTTTKWEGGILKYKDHLKSKILKDNAD 91
+FDGG+V ++HDFRLI+QVA EIWI +NGT +++G I YK LK +I K+ +
Sbjct: 757 NFDGGVVFITHDFRLIDQVAEEIWIVQNGTVKEFDGEIRDYKMMLKQQIAKEREE 811
Score = 46.0 bits (104), Expect = 3e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = -1
Query: 389 QLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLTAAWCLLVT 222
+LS G R R+ A + + P L++LDEPTNHLD+E + L + + LL+T
Sbjct: 420 ELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLIT 475
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 72.5 bits (170), Expect = 3e-14
Identities = 36/60 (60%), Positives = 43/60 (71%)
Frame = -1
Query: 407 QVCPMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLTAAWCLL 228
Q +R LSDG + RVVFA LA + PH+LLLDEPTNHLD+ +IDALA AIN T L+
Sbjct: 506 QTSEIRTLSDGLKSRVVFAALALEQPHILLLDEPTNHLDITSIDALAKAINVWTGGVVLV 565
Score = 49.2 bits (112), Expect = 3e-07
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = -3
Query: 246 GGMVLVSHDFRLINQVANEIWICENGTTTKWEGGILKYKDHLKSKILKDNADSAAKIR 73
GG+VLVSHDFRLI QV+ E+W ++ K + I +YK + ++ + D+ AK++
Sbjct: 560 GGVVLVSHDFRLIGQVSKELWEVKDKKVVKLDCSIEEYKKSMAKEV--QSRDTTAKVK 615
Score = 45.2 bits (102), Expect = 5e-06
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -1
Query: 398 PMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETI 279
P + +S G R RV + + P LLLLDEPTNHLD+E +
Sbjct: 217 PTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLEAV 256
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 66.1 bits (154), Expect = 3e-12
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = -1
Query: 395 MRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLTAAWCLLVTTL 216
M LS GQ+ RV FA L Q PH+L+LDEPTNHLDME++DAL A+ L+ +
Sbjct: 634 MITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDV 693
Query: 215 DLL 207
D L
Sbjct: 694 DFL 696
Score = 44.8 bits (101), Expect = 7e-06
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 252 FDGGMVLVSHDFRLINQVANEIWICENGTTTKWEGGILKYK 130
F GG++LVSHD +++ IW C++ +K++G I +YK
Sbjct: 682 FQGGVILVSHDVDFLDKTCTSIWQCDHNVVSKFDGTISQYK 722
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = -1
Query: 392 RQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINT 252
+ S G R R+ A + P LLLLDEP+N LD+ +I L++ + T
Sbjct: 353 KTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYLQT 399
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 52.0 bits (119), Expect = 4e-08
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = -1
Query: 398 PMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAI 258
P+ LS GQ+ +VV A W P LL+LDEPTN LD + + LA AI
Sbjct: 907 PISSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRDALGGLAVAI 953
Score = 41.5 bits (93), Expect = 6e-05
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = -1
Query: 398 PMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLTAAWCLLVT 222
P+ LS G + ++ A Q +LLLDEPTNHLD+ I L + + CL+V+
Sbjct: 559 PVASLSGGWKMKLELARAMLQKADILLLDEPTNHLDVANIAWLEAYLTSQKNITCLIVS 617
Score = 28.7 bits (61), Expect = 0.47
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 252 FDGGMVLVSHDFRLINQVANEIWICENGTTT-KWEGGILKYK-DHLKSKILKDNADSAAK 79
++GG+V++SH+ ++ + E W E G T K + + K + L K LK A K
Sbjct: 956 WEGGVVMISHNEEFVSALCPEHWHVEAGKVTGKGKTAVDDGKFEDLSEKDLKKIEAKATK 1015
Query: 78 IRK 70
+K
Sbjct: 1016 KKK 1018
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 49.2 bits (112), Expect = 3e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = -1
Query: 395 MRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAI 258
++ LS GQ+ ++V A W PH+++LDEPTN+LD +++ AL+ +
Sbjct: 901 IKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGL 946
Score = 39.1 bits (87), Expect = 3e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -1
Query: 398 PMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETI 279
P+ LS G + ++ ++ P +LLLDEPTNHLD+ +
Sbjct: 545 PIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLDVVNV 584
Score = 30.7 bits (66), Expect = 0.12
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 255 HFDGGMVLVSHDFRLINQVANEIWICENGTTT 160
+F GG+VLV+H + E+W NG T
Sbjct: 948 NFGGGVVLVTHSREFTEGLTEEVWAVNNGHMT 979
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 39.1 bits (87), Expect = 3e-04
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = -1
Query: 401 CPMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLTAAWCLLVT 222
C LS GQ+ R+ A + +L+LDEPT+ LD T + + DAI LV
Sbjct: 566 CKEASLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVI 625
Query: 221 TLDL 210
T D+
Sbjct: 626 THDM 629
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 34.7 bits (76), Expect = 0.007
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -1
Query: 386 LSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAIN 255
LS GQ+ R+ A + P +LLLDE T+ LD + + +A+N
Sbjct: 1259 LSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALN 1302
Score = 30.3 bits (65), Expect = 0.15
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Frame = -1
Query: 386 LSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLTAAWCLLVTTLDLL 207
+S GQ+ R+ A P +LLLDE T+ LD ++ + A++ + + TT+ +
Sbjct: 568 MSGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDNASRS----RTTIVIA 623
Query: 206 IRWRMKFGSVRTVLPQNGRVV---SSNTKIT*NLRY*RIMRIAPLKYANSDYTIV 51
R + V+ G++V S N + N Y R++ L D +V
Sbjct: 624 HRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAYARLVEAQKLSGGEKDQEMV 678
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 34.7 bits (76), Expect = 0.007
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 389 QLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLTAAWCLLV 225
+LS G++ RV A + P ++LLDE T+ LD T + A+N L + +V
Sbjct: 720 KLSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIV 774
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 33.1 bits (72), Expect = 0.022
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 386 LSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTLT 246
LS+GQ R + A Q P LLLLDEP LD+ + L+ + ++
Sbjct: 149 LSNGQSRRAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLLGEMS 195
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 31.9 bits (69), Expect = 0.050
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 389 QLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDME 285
QLS GQ+ R+ A + P L+LDE T+ LD E
Sbjct: 619 QLSGGQKQRIAIARALLRNPAFLILDEATSALDGE 653
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.5 bits (58), Expect = 1.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -1
Query: 395 MRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDALADAINTL 249
M +SDG+R RV + +LLLDE T LD + A AD +N L
Sbjct: 126 MHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLD---VLARADLLNFL 171
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 326 LLLLDEPTNHLDMETIDALADAINTL 249
+L LDEPT +LD E I +LA ++ +
Sbjct: 1208 ILALDEPTTNLDEENICSLAKNLSRI 1233
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 1.9
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = -1
Query: 386 LSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDME-TIDALADAINT--LTAAWCLLVTTL 216
LS GQ+ R+ A + + LLD+ + +D D + + + + L + C++++T
Sbjct: 706 LSGGQKARISLARAVYSRSDIYLLDDILSAVDQHVNRDLVRNLLGSKGLLRSRCVILSTN 765
Query: 215 DLLIRWRMKFGSVRTVLPQNGRVVSSNT 132
L + +K S+ +L +NG+++ S +
Sbjct: 766 SLTV---LKEASMIYML-RNGKIIESGS 789
Score = 25.4 bits (53), Expect = 4.4
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -1
Query: 386 LSDGQRCRVVFAWLAWQTP-HLLLLDEPTNHLDMETIDAL 270
LS GQR +++ A TP +LLLDE T +D+ET DA+
Sbjct: 1361 LSSGQR-QLMCLTRALLTPTRVLLLDEATAAVDVET-DAI 1398
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 386 LSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDME 285
LS G+ R A +A Q + + DEP+++LD++
Sbjct: 220 LSGGELQRFAIAAVATQKADVYMFDEPSSYLDIK 253
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 4.4
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -1
Query: 326 LLLLDEPTNHLDMETIDALADAINTLTAAWCLLVTTLDLLIRWRMKFGSVRTVLPQNGRV 147
+LLLDEP N LD ++ L + L + ++ ++ ++ + +L NG
Sbjct: 920 ILLLDEPANGLDSQSAWMLVCILQKLARSGLSILCSVSQPSSRILELFDMMLILDLNGNT 979
Query: 146 VSSNT 132
V +T
Sbjct: 980 VYYDT 984
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 386 LSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMET 282
LS GQ+ R+ A + ++L+D+ + LD+ T
Sbjct: 740 LSGGQKQRIALARAVYSPTSIVLMDDVFSALDIHT 774
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 5.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Frame = -2
Query: 427 LTGGRASRCVPCVSYPTGSVVVLYSRGW 344
+ G C+ CV + +L RGW
Sbjct: 430 IIGNLGESCIQCVRLLISQITILEKRGW 457
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 24.6 bits (51), Expect = 7.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 383 SDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETIDAL 270
S GQR + A + + +LLLDE T + ET DA+
Sbjct: 1364 SSGQRQLICLARVLLTSTRILLLDEATASVHAET-DAI 1400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,461
Number of Sequences: 5004
Number of extensions: 41447
Number of successful extensions: 133
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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