Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1100
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.6  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 189 IWICENGTTTKWEGGILKYKDHLKSKILKDNADSAAKI 76
           IW   +GT ++    +++ +D++ +  +K N   AA I
Sbjct: 603 IWFTTSGTISEKFRKLIRIEDNVATLRMKLNPTKAASI 640


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 159 KWEGGILKYKDHLKSKILKDNADSAAKIRK 70
           KWE    +  D L+ K+L D       ++K
Sbjct: 551 KWERANRELPDDLRQKVLPDGTLVITSVQK 580


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 159 KWEGGILKYKDHLKSKILKDNADSAAKIRK 70
           KWE    +  D L+ K+L D       ++K
Sbjct: 551 KWERANRELPDDLRQKVLPDGTLVITSVQK 580


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 189 IWICENGTTTKWEGGILKYKDHLKSKILKDNADSAAKI 76
           IW   +GT ++    +++ +D + +  +K N   AA I
Sbjct: 550 IWFTTSGTISEKFRKLIRIEDDVATLRMKLNPTKAASI 587


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,567
Number of Sequences: 438
Number of extensions: 2754
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)