Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1099
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-5|CAA92177.2|  303|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z68117-5|CAA92177.2|  303|Caenorhabditis elegans Hypothetical
           protein F45E6.1 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 280 GMLIDDTLFYSNIFRAKFQNRLFLTI*LIGTKSMKALQLRTN 155
           G LI  T+FY  IF +  Q  + LTI  +G K M   +L  N
Sbjct: 102 GSLIVATIFYYLIFISSMQRFMLLTIEKLGRKLMTGARLTFN 143


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 414 KIKNRIFII*SKLLTSLFENFHFKVI 337
           + K + F++   LLTS F N H K+I
Sbjct: 34  EFKEKTFVVRESLLTSEFRNGHMKII 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,815
Number of Sequences: 27780
Number of extensions: 145850
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)