Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1099
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04500.1 68417.m00653 protein kinase family protein contains ...    28   4.3  
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH...    27   5.7  

>At4g04500.1 68417.m00653 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 646

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = -2

Query: 337 IINVLIFIVITFFYMKSQMGMLIDDTLFYSNIFRA--KFQNRLFLT 206
           +IN++IF+V+ F + + Q   +I+D +F SN  ++  +F  R+ +T
Sbjct: 296 VINLIIFVVLIFSWKRKQSHTIIND-VFDSNNGQSMLRFDLRMIVT 340


>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
           (CHX11) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 671

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 340 DIINVLIFIVITFFYMKSQMGMLIDDT 260
           D++ V+IF +I FF  K  +  +ID T
Sbjct: 129 DLVAVIIFFLIVFFVFKPMVQWIIDRT 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,011,088
Number of Sequences: 28952
Number of extensions: 122941
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)