Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1098
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    94   1e-20
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    94   1e-20
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    29   0.52 
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   6.4  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   6.4  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   6.4  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.4  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 40/53 (75%), Positives = 48/53 (90%)
 Frame = +3

Query: 252 QTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGY 410
           +TGKHGHAKVH+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGY
Sbjct: 49  KTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGY 100



 Score = 78.6 bits (185), Expect = 5e-16
 Identities = 35/49 (71%), Positives = 41/49 (83%)
 Frame = +1

Query: 109 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSK 255
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSK
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSK 49


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 40/53 (75%), Positives = 48/53 (90%)
 Frame = +3

Query: 252 QTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGY 410
           +TGKHGHAKVH+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGY
Sbjct: 49  KTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGY 100



 Score = 78.6 bits (185), Expect = 5e-16
 Identities = 35/49 (71%), Positives = 41/49 (83%)
 Frame = +1

Query: 109 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSK 255
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSK
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSK 49


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 243 VHIQTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 377
           ++I+ G+H  A  +++  +  N   K +D CPST   D+ H+ R D
Sbjct: 161 IYIKIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 261 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 380
           K   A   L+  D F+G ++  IC S  N+ +  V  ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 345  NMDVPHVKREDYQLTDISDDGY 410
            NM +P+++ E  Q+ D + D Y
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNY 989


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 344 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 255
           +CG T +FI    E+I+P  V     VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +3

Query: 234 C*NVHIQTGKHG--HAK--VHLVGIDIFNGKKY 320
           C +V    G HG  HA    H++G+D+ NG  Y
Sbjct: 54  CHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 301 ISIPTK*TLAWPCFPVWMWTFQQSC 227
           ++IPTK T  W C P++    + SC
Sbjct: 4   LNIPTKNTFHWSCDPLFNELKRLSC 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,887
Number of Sequences: 5004
Number of extensions: 44966
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)