Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1098
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                79   3e-15
SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.014
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               31   0.71 
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.93 
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     29   2.2  
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)         28   3.8  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   5.0  
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   5.0  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   27   6.6  
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_1762| Best HMM Match : I-set (HMM E-Value=2.8e-12)                  27   6.6  
SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 36/61 (59%), Positives = 44/61 (72%)
 Frame = +1

Query: 103 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKPESTATLKF 282
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSK       K 
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644

Query: 283 T 285
           T
Sbjct: 645 T 645


>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 347 HGRTPREARR-LPTD*YLG*WLPLETLMALETNRVDPLPVWEKGGKPPPP 493
           HGR P E R  LP++ + G WLP ET        VD  PV  KGG P  P
Sbjct: 766 HGRLPSETRGWLPSETH-G-WLPSETCGGYPVRHVDGYPVRPKGGYPVRP 813


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 116 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 250
           T+K HT++P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 92  KFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 190
           K KT +  T+K +T++P T  P+   P   +PC
Sbjct: 100 KPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132



 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 116 TSKTHTSRPETPGPQPPSPCNVRP 187
           T+K HT++P T  PQ   P   +P
Sbjct: 68  TTKPHTTKPRTTKPQTTKPHTTKP 91



 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 101 TQQWVTSKTHTSRPETPGPQPPSPCNVRP 187
           T +  T+K  T++P T  P    PC  +P
Sbjct: 108 TNKPYTTKPRTTKPRTTKPHTTKPCTTKP 136


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 466 PNRQGVHPVGFQGHQGFKG*P 404
           P R GV   GFQG +GFKG P
Sbjct: 556 PGRGGVGSQGFQGQKGFKGDP 576


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 104 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPNRKARP 271
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P     P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGPPPAP 175


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 138 LEVCVFDVTHCCVLNLTTVRNDKIKKITIY 49
           + + +F VT+CC L LT +   + +++TIY
Sbjct: 14  VNLIIFTVTNCCFLVLTALIGFRDRQVTIY 43


>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
          Length = 550

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +1

Query: 148 SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKPESTATLKFTWLGLISSMVKSMKI 327
           S A+AT    C  L K GF + K        M T +PE  A   F  L L S   +S K+
Sbjct: 293 SEATATSSQLCELLSKGGFELTKWLSNNREVMQTFQPEDLAP-SFKDLNLDSDEPRSQKV 351


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 119 SKTHTSRPETPGPQPPSPCNV 181
           ++T T++PET  P+PP+P  +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -3

Query: 360 GVRPCCVWRDRYLHTFYH*RYQSQPSEL*RGRAFRFGCGHFNNLAWTTLQHNETVFTQ 187
           G+R C    D  L  F +    S+  ++      R+G GH N +    L H   + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 113 VTSKTHTSRPETPGPQPPSPCNVRP 187
           VT K  T +P TP P  P P   RP
Sbjct: 768 VTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 499 KKRGGGFPPLFPNRQGVHPVGFQG 428
           K RGG  PPL P  Q +HP   +G
Sbjct: 427 KVRGGSKPPLPPKPQDLHPGSKEG 450


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 119 SKTHTSRPETPGPQPPSP 172
           ++T T +P TP P PP+P
Sbjct: 288 TRTPTPKPRTPTPSPPTP 305


>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 134 SRPETPGPQPPSPCNVRP 187
           +RP TPG +PP P N  P
Sbjct: 166 TRPTTPGMRPPEPINDAP 183


>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 431 LETNRVDPLPVWEKGGKPPPPFF 499
           + T   +P+  W   GKPPPP +
Sbjct: 84  IATGFPEPVIAWSHDGKPPPPVY 106


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 499 KKRGGGFPPLFPNRQGVHPVGFQG 428
           K RGG  PPL P  Q +HP   +G
Sbjct: 179 KVRGGSKPPLPPKPQDLHPGSKEG 202


>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 101 TQQWVTSKTHTSRPETPGPQPP-SPCNVRPCVKTVSL 208
           T +   +K HTS   TPG   P SP +  P   T SL
Sbjct: 262 TPEMAVNKRHTSVSHTPGGVVPFSPASFSPAAATPSL 298


>SB_1762| Best HMM Match : I-set (HMM E-Value=2.8e-12)
          Length = 128

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 431 LETNRVDPLPVWEKGGKPPPPFF 499
           + T   +P+  W   GKPPPP +
Sbjct: 26  IATGFPEPVIAWSHDGKPPPPVY 48


>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -1

Query: 374 FALHVGYVHVVCGGT-DIFILFTIEDINPNQVNFSVAVLSGLDVDISTILHGRPFSITKP 198
           FA H   +  +C  T  +FI +TI+   P      +     L + IS IL+  P S    
Sbjct: 366 FAYH-SVILSLCSATGQLFIFYTIQSFGPVVFTIIMTTRLMLSIVISCILYQHPLSTQAV 424

Query: 197 F 195
           F
Sbjct: 425 F 425


>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 240 NVHIQTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHV 365
           N   +  + G  + H   + + NGK+Y D+C + +   VP V
Sbjct: 41  NCDCEAKQAGALRYHEGNLQVCNGKEYVDVC-ANNRASVPEV 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,890
Number of Sequences: 59808
Number of extensions: 369900
Number of successful extensions: 1153
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)