Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1098
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...    88   4e-18
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    84   5e-17
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   1.4  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   1.4  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   1.4  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   1.4  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   1.4  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    28   4.4  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   4.4  
L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     27   7.6  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 40/53 (75%), Positives = 43/53 (81%)
 Frame = +3

Query: 252 QTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGY 410
           +TGKHGHAKVH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I DDGY
Sbjct: 51  KTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGY 102



 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = +1

Query: 121 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSK 255
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSK
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSK 51


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 37/50 (74%), Positives = 40/50 (80%)
 Frame = +3

Query: 252 QTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISD 401
           +TGKHGHAKVH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I D
Sbjct: 85  KTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSIED 134



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 31/45 (68%), Positives = 39/45 (86%)
 Frame = +1

Query: 121 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSK 255
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSK
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSK 85


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 119 SKTHTSRPETPGPQPPSPCNVRPCVKTV 202
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 119 SKTHTSRPETPGPQPPSPCNVRPCVKTV 202
           S + T+   TPGP P +PC+  P V T+
Sbjct: 29  SASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 119 SKTHTSRPETPGPQPPSPCNVRPCVKTV 202
           S + T+   TPGP P +PC+  P V T+
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 119 SKTHTSRPETPGPQPPSPCNVRPCVKTV 202
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 116 TSKTHTSRPETPGPQPPSPCNVRP 187
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +1

Query: 136 ETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSK--PESTATLKFTWLGLISSM 309
           +T D G S      CS++R + +           + S S   P  +  L  T  G  +S 
Sbjct: 3   KTDDGGGSGRLSSSCSSIRSSNYSRSYTPSFNTFKYSPSSYTPNISRNLNTTSTGSTTSD 62

Query: 310 VKSMKISVPPHTTWTYPT*SAKTTN 384
              +  S  P +  ++ T S+ +TN
Sbjct: 63  TPKLSSSSAPRSRLSFTTPSSTSTN 87


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 271 WPCFPVWMWTFQ--QSCMDDPSA*RNRFYAG 185
           WPCFP   W  +    C+D+      RFY G
Sbjct: 269 WPCFPYSSWKEKLCSECVDNTGHCPMRFYKG 299


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 271 WPCFPVWMWTFQ--QSCMDDPSA*RNRFYAG 185
           WPCFP   W  +    C+D+      RFY G
Sbjct: 231 WPCFPYSSWKEKLCSECVDNTGHCPMRFYKG 261


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 203 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 111
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 478 PPLFPNRQGVHPVGFQGHQGFKG*P 404
           PP  P  QG  P G  GH GF G P
Sbjct: 166 PPCLPCPQG--PAGVPGHPGFPGDP 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,889
Number of Sequences: 27780
Number of extensions: 271359
Number of successful extensions: 870
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)