Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1098
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 91 4e-19
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 89 2e-18
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 88 4e-18
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 2.3
At1g21370.2 68414.m02674 expressed protein 28 3.1
At1g21370.1 68414.m02673 expressed protein 28 3.1
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 28 4.1
At3g58750.1 68416.m06548 citrate synthase, glyoxysomal, putative... 28 4.1
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 28 4.1
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 28 4.1
At1g20860.1 68414.m02613 phosphate transporter family protein si... 27 5.4
At3g51290.1 68416.m05614 proline-rich family protein 27 7.1
At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2 (... 27 7.1
At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 27 9.4
At3g45410.1 68416.m04902 lectin protein kinase family protein co... 27 9.4
At1g34355.1 68414.m04265 forkhead-associated domain-containing p... 27 9.4
At1g12380.1 68414.m01431 expressed protein 27 9.4
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00... 27 9.4
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = +3
Query: 252 QTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGY 410
+TGKHGHAK H V IDIF KK EDI PS+HN DVPHV R DYQL DIS+DGY
Sbjct: 48 KTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGY 100
Score = 68.9 bits (161), Expect = 2e-12
Identities = 30/72 (41%), Positives = 46/72 (63%)
Frame = +1
Query: 121 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKPESTATLKFTWLGLI 300
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSK K ++ +
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 301 SSMVKSMKISVP 336
K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/53 (71%), Positives = 42/53 (79%)
Frame = +3
Query: 252 QTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGY 410
+TGKHGHAK H V IDIF KK EDI PS+HN DVPHV R DYQL DIS+DG+
Sbjct: 48 KTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGF 100
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = +1
Query: 121 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKPESTATLKFTWLGLI 300
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSK K ++ +
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 301 SSMVKSMKISVP 336
K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 87.8 bits (208), Expect = 4e-18
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = +3
Query: 252 QTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGY 410
+TGKHGHAK H V IDIF KK EDI PS+HN DVPHV R DYQL DI++DG+
Sbjct: 48 KTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGF 100
Score = 60.9 bits (141), Expect = 5e-10
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +1
Query: 121 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKPESTATLKFTWLGLI 300
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSK K ++ +
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 301 SSMVKSMKISVP 336
K ++ VP
Sbjct: 64 IFTAKKLEDIVP 75
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 221 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 114
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At1g21370.2 68414.m02674 expressed protein
Length = 342
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = -1
Query: 377 VFALHVGYVHVVCGGTDIFILFTIEDINPNQVNFSVAVLSGLDVDISTILHGRPFSITKP 198
+F LH V VVC I +L + I N++ +V+ D+D G PF+ K
Sbjct: 53 MFKLHPVLVFVVCVSFGITVLILVSSIYGNRLGSTVSYYKKNDLDSD----GYPFANLKN 108
Query: 197 FLRRAEH 177
+ A H
Sbjct: 109 LVMVAGH 115
>At1g21370.1 68414.m02673 expressed protein
Length = 342
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = -1
Query: 377 VFALHVGYVHVVCGGTDIFILFTIEDINPNQVNFSVAVLSGLDVDISTILHGRPFSITKP 198
+F LH V VVC I +L + I N++ +V+ D+D G PF+ K
Sbjct: 53 MFKLHPVLVFVVCVSFGITVLILVSSIYGNRLGSTVSYYKKNDLDSD----GYPFANLKN 108
Query: 197 FLRRAEH 177
+ A H
Sbjct: 109 LVMVAGH 115
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 95 FKTQQWVTSKTHTSRPETPGPQPPSP 172
F T Q K++ S P +P P PP P
Sbjct: 83 FHTNQTAVIKSYASPPPSPPPPPPPP 108
>At3g58750.1 68416.m06548 citrate synthase, glyoxysomal, putative
strong similarity to SP|P49299 Citrate synthase,
glyoxysomal precursor {Cucurbita maxima}; contains Pfam
profile PF00285: Citrate synthase
Length = 514
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 234 C*NVHIQTGKHGHAKVHLVGIDIFNGKKYE 323
C + HI HG K +L +D GKKY+
Sbjct: 37 CTSAHITAAPHGSLKGNLTIVDERTGKKYQ 66
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 119 SKTHT-SRPETPGPQPPS 169
SKTH SRP TP P PPS
Sbjct: 127 SKTHERSRPITPSPPPPS 144
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = +2
Query: 119 SKTHT-SRPETPGPQPP 166
SKTH SRP TP P PP
Sbjct: 144 SKTHEPSRPNTPPPPPP 160
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +2
Query: 122 KTHTSRPETPGPQPPS---PCNVRPCVKTVSLC*RVVHARLLKCP 247
KT T P PP PCN PC S + + R CP
Sbjct: 22 KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66
>At1g20860.1 68414.m02613 phosphate transporter family protein
similar to phosphate transporter [Catharanthus roseus]
GI:2208908, inorganic phosphate transporter 1 [Solanum
tuberosum] GI:1420871; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 534
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 98 KTQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHAR 232
K Q V S++H S T P PP P P K S C +H R
Sbjct: 243 KDMQRVMSRSHISDEATTDPPPPPP---PPSYKLFSRCFFRLHGR 284
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 98 KTQQWVTSKTHTSRPETPGPQPPSP 172
+T W T+ T + P P P PP P
Sbjct: 91 ETTTWTTTTTSSVLPPPPPPPPPPP 115
>At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2
(PLDALPHA2) (PLD2) / choline phosphatase 2 identical to
phospholipase D alpha 2 ( PLD alpha 2) SP:Q9SSQ9 from
[Arabidopsis thaliana]
Length = 810
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 350 HVVCGGTDIFILFTIEDINPNQVNFSVAVLSGLDVDISTILHG 222
H+ CG ++FT++D NP ++ + + ILHG
Sbjct: 81 HIYCGHMAKHVIFTVKDANP----IGATLIGRGYIPVEDILHG 119
>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 694
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 124 DTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCK 231
D +E G SG S + +A +G+ +GR CK
Sbjct: 367 DQAYEYGKSGKSLLRALNVAAFAVSGYASTEGRHCK 402
>At3g45410.1 68416.m04902 lectin protein kinase family protein
contains Pfam profiles: PF00069 protein kinase domain,
PF00138 legume lectins alpha domain, PF00139 legume
lectins beta domain
Length = 664
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 434 PRPSGFQGVAIIRDISQLVVFALHVGYVHVV 342
P PS +Q ++I++DI+ + + LH G VV
Sbjct: 433 PSPSWYQRISILKDIASALSY-LHTGTKQVV 462
>At1g34355.1 68414.m04265 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1477
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 94 IQNTTMGDIEDTHFETGDSGASATFPMQ 177
+ NT +GD ED H + G ++ P +
Sbjct: 341 LANTALGDDEDLHLDVTSEGTGSSVPSE 368
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 116 TSKTHTSRPETPGPQPPSP 172
T+ HT+ +TP P PP P
Sbjct: 3 TTNAHTATQQTPPPPPPPP 21
>At1g01110.1 68414.m00014 expressed protein contains Prosite
PS00165: Serine/threonine dehydratases
pyridoxal-phosphate attachment site
Length = 364
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 474 PFSQTGKGSTRLVSKAIRVSRGSHHPRYQSVGSLRAS 364
P+S+TG GS + SR SHH YQS + A+
Sbjct: 162 PYSRTGAGSPSRGQRPSSPSRTSHH--YQSRNNFSAT 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,833
Number of Sequences: 28952
Number of extensions: 257504
Number of successful extensions: 838
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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