Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1095
(477 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 123 1e-29
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 67 1e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 61 1e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 1e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.003
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.37
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.4
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 5.9
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 5.9
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.9
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.9
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 7.9
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 123 bits (297), Expect = 1e-29
Identities = 55/63 (87%), Positives = 56/63 (88%)
Frame = +1
Query: 253 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPPKVLL 432
GQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEE P +
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 433 QPL 441
PL
Sbjct: 108 APL 110
Score = 96.7 bits (230), Expect = 2e-21
Identities = 41/49 (83%), Positives = 47/49 (95%)
Frame = +2
Query: 116 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 262
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGM ++
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 67.3 bits (157), Expect = 1e-12
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEQPPKVLL 432
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEE P +
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 433 QPL 441
PL
Sbjct: 113 PPL 115
Score = 55.2 bits (127), Expect = 5e-09
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 244
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 60.9 bits (141), Expect = 1e-10
Identities = 25/65 (38%), Positives = 46/65 (70%)
Frame = +1
Query: 238 RDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQP 417
+ G KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGR- 101
Query: 418 PKVLL 432
K+LL
Sbjct: 102 -KILL 105
Score = 48.0 bits (109), Expect = 7e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 122 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 226
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 50.4 bits (115), Expect = 1e-07
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE 411
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPED 123
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 217
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 220
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 30.3 bits (65), Expect = 0.16
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 304 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQP 417
+ +K I +G V NWD +W + +L+ P E P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 220
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 259 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE 411
++ YV DE Q I + +K +GI+ +W+ W +L+V P E
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTE 101
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 229
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 33.5 bits (73), Expect = 0.017
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 238 RDGRYGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTF 381
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF 106
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 0.37
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 351 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLSIPTITP*WRGLPTIEGNTARGASSPAK 172
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 171 PALHIP 154
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 289 SVPHLLHKSPSVHTDHHALMAGPSHDRGEH 200
+VP L P+ HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 249 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 115
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 161 TYRSHCLLPTRQLLRRTS*ISEI 93
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 3.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 319 PIEHGIVTNWDDMEKIWHHTF 381
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 441 QRLKQDLWGLFLGGDTQLIVEG 376
++L DLW LFLG IVEG
Sbjct: 755 RQLSHDLWYLFLGYFIITIVEG 776
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +1
Query: 316 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPP 420
YP G++ +W ++E + E+R+ P+ P
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPKGSMP 278
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAG 181
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 179 GDDAPRAVFPSIVGRPRHQGVMVGM 253
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 359 RRFGIIPSTMSCVSPPRNNPQRSCFNL 439
R FGIIP ++S N +SCF L
Sbjct: 877 RSFGIIPKSLSQEMNNDENDGKSCFVL 903
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 9.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 301 ILTLKYPIEHGIVTN 345
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 9.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 340 TNWDDMEKIWHHTFYNELRVAPEEQP 417
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,240
Number of Sequences: 5004
Number of extensions: 49803
Number of successful extensions: 139
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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