Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1095
(477 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_56| Best HMM Match : Actin (HMM E-Value=0) 126 1e-29
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 126 1e-29
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 4e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 50 7e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.052
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.37
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 28 4.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 27 7.9
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 7.9
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 27 7.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 126 bits (303), Expect = 1e-29
Identities = 56/63 (88%), Positives = 57/63 (90%)
Frame = +1
Query: 253 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPPKVLL 432
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE P +
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 433 QPL 441
PL
Sbjct: 109 APL 111
Score = 100 bits (239), Expect = 7e-22
Identities = 45/51 (88%), Positives = 49/51 (96%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 262
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 126 bits (303), Expect = 1e-29
Identities = 56/63 (88%), Positives = 57/63 (90%)
Frame = +1
Query: 253 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPPKVLL 432
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE P +
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 433 QPL 441
PL
Sbjct: 108 APL 110
Score = 97.5 bits (232), Expect = 5e-21
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +2
Query: 116 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 262
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 126 bits (303), Expect = 1e-29
Identities = 56/63 (88%), Positives = 57/63 (90%)
Frame = +1
Query: 253 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPPKVLL 432
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE P +
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 433 QPL 441
PL
Sbjct: 108 APL 110
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +2
Query: 116 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 262
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 126 bits (303), Expect = 1e-29
Identities = 56/63 (88%), Positives = 57/63 (90%)
Frame = +1
Query: 253 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPPKVLL 432
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE P +
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 433 QPL 441
PL
Sbjct: 109 APL 111
Score = 104 bits (250), Expect = 3e-23
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 262
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 126 bits (303), Expect = 1e-29
Identities = 56/63 (88%), Positives = 57/63 (90%)
Frame = +1
Query: 253 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPPKVLL 432
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE P +
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 433 QPL 441
PL
Sbjct: 109 APL 111
Score = 100 bits (239), Expect = 7e-22
Identities = 43/51 (84%), Positives = 49/51 (96%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 262
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 98.7 bits (235), Expect = 2e-21
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +2
Query: 116 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 262
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/43 (93%), Positives = 40/43 (93%)
Frame = +1
Query: 253 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 381
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 235
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 235
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = +1
Query: 259 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEQPPKVLL 432
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF E ++ + + KVLL
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF-GESKMNIDPRNTKVLL 109
Score = 44.4 bits (100), Expect = 5e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 128 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 226
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 104 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 250
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 50.4 bits (115), Expect = 7e-07
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 262 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE 411
D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPED 331
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 232 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 116
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 268 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 390
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 122 EVAALVVDNGSGMCKAGFAGDDAPRAV 202
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.37
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 207 GNTARGASSPAKPALHIPEPLSTT 136
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.37
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 207 GNTARGASSPAKPALHIPEPLSTT 136
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 207 GNTARGASSPAKPALHIPEPLSTT 136
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 207 GNTARGASSPAKPALHIPEPLSTT 136
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 207 GNTARGASSPAKPALHIPEPLSTT 136
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 128 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMD 256
+ +++D GS KAGFA ++A + + S++G H + + +D
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEHAFLSLKVD 524
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 222 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 112
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = -2
Query: 413 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCASS--PT*ESFCPYRPS 240
CS + + C + ++V CS + V + ++C+ P PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 239 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 147
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 442 PKVEAGPLGVVPRGRHAAHCRR---YDAKSSPC 353
P V A + +VPRG H+ C R Y ++ PC
Sbjct: 127 PAVRARYIKLVPRGWHSRICMRLEFYGCRADPC 159
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 374 IPSTMSCVSPPRNNPQRSCFNLWEGLSPLQNPPK 475
+ S C+SPP+N ++ C + E +PPK
Sbjct: 807 LESPKQCISPPKNTLKQVCPSQLESPKQCISPPK 840
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,040
Number of Sequences: 59808
Number of extensions: 442494
Number of successful extensions: 1240
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -