Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1094
         (471 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    33   0.001
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    23   1.4  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   4.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 263 TANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPR-TGHFLG 430
           T + F NMP L  L+++ N+L ++D DTF            +N I  +P     FLG
Sbjct: 264 TKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLG 320



 Score = 26.6 bits (56), Expect = 0.12
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 260 ITANTFKNMPGLMYLNVAGNNLSDMDPDTF 349
           I   TF+N+P L  L++A N++S +D + F
Sbjct: 155 IAYETFQNLPELEDLDLAYNSISSLDFNIF 184



 Score = 25.0 bits (52), Expect = 0.35
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 254 EYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSL 406
           E +    F N+  L  LN+ GN ++ +  +TF             N I SL
Sbjct: 129 ESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSL 179


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 183 QEI*GDCLKALEVTASYCSQTSQD 112
           QE+  +   AL+ + S CSQ  QD
Sbjct: 59  QELKNNLADALQTSCSKCSQRQQD 82


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 183 QEI*GDCLKALEVTASYCSQTSQD 112
           QE+  +   AL+ + S CSQ  +D
Sbjct: 59  QELKNNLADALQTSCSKCSQRQKD 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,576
Number of Sequences: 336
Number of extensions: 1860
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)