Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1094
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   2.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   4.4  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   5.8  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   5.8  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   7.7  

>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 263 TANTFKNMPGLMYLNVAGNNLSDMD 337
           TA TF+N P L    + GN L ++D
Sbjct: 142 TACTFQNYPDLNTCEICGNQLKNVD 166


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 321 LLPATFKYIKPGIFLKVFAVMYSCYSMKHQALVQRKRSRSNFRTQLQEI*GDCLKALEVT 142
           L+  +  Y KP     V   ++S  S KH   +  K + +N  + LQ    + LK  ++ 
Sbjct: 501 LVQQSHSYKKPSDSKSVGGNIFSVNSKKHSVNINAKTAANNGLSHLQNFSEELLKKRKLF 560

Query: 141 ASYCS 127
           +S  S
Sbjct: 561 SSLFS 565


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 268 CRDVLMLQYETSSSCTEEAFKK*FSDPAAGNLRGLFESVRSNSFLLF 128
           CRD L L   +SS+C   +  K       GN   + +  RS SF +F
Sbjct: 822 CRDNLNLSGLSSSTCNANSVNKLMKHVMMGN--EMMKYPRSESFKMF 866


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 387 TITLNRSHAPDIFSGKKLPGYLK 455
           TI++N SH   +F G   PGYLK
Sbjct: 456 TISVN-SHYSCLFGGSPSPGYLK 477


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = -1

Query: 318 LPATFKYIKP-----GIFLKVFAVMYSCYSMKHQALVQRKRSRSNFRTQLQEI*GDCLKA 154
           LP T   +KP     G  LK+  ++       H A  Q K     F   L  +  DCLK 
Sbjct: 467 LPGTKVQLKPAYSPEGKLLKLQLIIKWGGEFTHSARYQSKDLGEQFHKDLYIMNRDCLKD 526

Query: 153 LEVTAS 136
           +E+  S
Sbjct: 527 VEIYTS 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,501
Number of Sequences: 5004
Number of extensions: 31500
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)