Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1094
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0731 - 6516894-6517473,6517485-6519574 32 0.27
12_01_0727 + 6446283-6449300 32 0.27
05_06_0140 + 25957981-25958108,25958230-25958301,25958390-259584... 31 0.62
11_06_0145 - 20615044-20617167,20617444-20618076 30 1.1
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 29 1.4
11_08_0012 + 27623055-27623277,27623291-27625165,27625456-276255... 29 1.4
02_01_0324 + 2205818-2205936,2206031-2206103,2206264-2206356,220... 29 1.4
12_01_0715 - 6230393-6231559,6233234-6234553 29 2.5
07_01_0234 + 1715338-1718233,1718351-1718760 29 2.5
12_01_0741 + 6649988-6653065 28 3.3
01_01_0418 - 3142659-3145622 28 3.3
11_08_0026 + 27752519-27755441,27755538-27755923 28 4.4
11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038... 28 4.4
06_03_1219 - 28491185-28494415 28 4.4
06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253... 28 4.4
02_02_0025 + 6183328-6186127,6186265-6186623 28 4.4
11_01_0631 - 5063622-5063635,5065050-5065203,5065280-5065441,506... 27 5.8
06_03_1221 - 28514952-28518152 27 5.8
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 27 5.8
01_06_0509 - 29921224-29924589 27 5.8
11_08_0033 + 27820563-27823482,27823593-27823996 27 7.6
07_03_0256 - 15875066-15877025,15877292-15877911 27 7.6
04_04_1587 + 34630678-34632282 27 7.6
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296... 27 7.6
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 116
NS G I P+ G+ L ++LSNNNL L P
Sbjct: 633 NSISGNIPPSICDGIKSLQLIDLSNNNLTGLIP 665
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 116
NS G I P+ G+ L ++LSNNNL L P
Sbjct: 626 NSISGNIPPSICDGIKSLQLIDLSNNNLTGLIP 658
>05_06_0140 +
25957981-25958108,25958230-25958301,25958390-25958461,
25958547-25958627,25959102-25959294,25959429-25959525,
25959678-25959750,25960140-25960620
Length = 398
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 266 ANTFKNMPGLMYLNVAGNNLSDMDPD 343
+++F N+ G+ YLN++ NNL+ PD
Sbjct: 55 SSSFANLKGVQYLNLSNNNLTGSIPD 80
>11_06_0145 - 20615044-20617167,20617444-20618076
Length = 918
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 242 IL*HEYITANTFKNMPGLM---YLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLP 409
IL H Y+ +F N P L+ YL+++ N LS++ P NN IK++P
Sbjct: 523 ILQHNYLEDGSFGNFPSLLSLQYLDLSFNKLSNI-PVEICMQVNLRYLNLSNNRIKTVP 580
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 ITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIK-SLPRT 415
I + F N P L YLN+ N+LS + P + N + SLP T
Sbjct: 189 IPVSVFNNTPLLAYLNIGNNSLSGLIPTAIGSLSMLQVLVLQYNQLSGSLPPT 241
>11_08_0012 +
27623055-27623277,27623291-27625165,27625456-27625567,
27625586-27626130,27626305-27626591,27626770-27626805
Length = 1025
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +2
Query: 251 HEYITANT----FKNMPGLMYLNVAGNNLSDMDP 340
H Y+T + F N P L YLNV N+LS + P
Sbjct: 179 HNYLTGSIPDDLFNNTPLLTYLNVGNNSLSGLIP 212
>02_01_0324 +
2205818-2205936,2206031-2206103,2206264-2206356,
2206558-2206641,2207206-2207298
Length = 153
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 331 YGSRYIQKITRSRRVRSPQQSH*IAPTHRTFS-RGKNYPDTL 453
YG+ +++ R RSP S + P H+ FS +G+ YP L
Sbjct: 13 YGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAIL 54
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 116
NS G I P+ + L ++LSNNNL L P
Sbjct: 548 NSISGNIPPSICDRIKSLQLIDLSNNNLTGLIP 580
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 260 ITANTFKNMPGLMYLNVAGNNLSDMDPD 343
I N F N P L Y+N N+LS PD
Sbjct: 179 IPENIFNNTPLLTYINFGNNSLSGSIPD 206
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 101
NS +G + ++ + +LY +NLSNN L
Sbjct: 464 NSFVGIVELTSYSKLQNLYVLNLSNNKL 491
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 116
NS GYI P + L ++LS NNL P
Sbjct: 635 NSLSGYIPPTICDAIKSLQIIDLSYNNLTGSIP 667
>01_01_0418 - 3142659-3145622
Length = 987
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPE 119
N+ IG + ++F + DL+++NLSNN L + E
Sbjct: 431 NNFIGTLELSSFWKLPDLFSLNLSNNKLSVVDGE 464
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 260 ITANTFKNMPGLMYLNVAGNNLSDMDP 340
I NT N+P L +L++ GNN + P
Sbjct: 264 IAGNTSFNLPALQWLSIDGNNFTGQIP 290
>11_08_0009 +
27600881-27602592,27602665-27603008,27603159-27603806,
27603908-27604296
Length = 1030
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 260 ITANTFKNMPGLMYLNVAGNNLSDMDP 340
I + F N P L YLN+A N+LS P
Sbjct: 196 IPNSLFNNTPLLSYLNIANNSLSGSIP 222
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 281 NMPGLMYLNVAGNNLSDMDPD 343
N+ L+YLN++GN+LS PD
Sbjct: 94 NLTALVYLNLSGNDLSGPFPD 114
>06_03_0598 +
22621765-22624795,22624903-22625066,22625290-22625328,
22625479-22625487
Length = 1080
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 269 NTFKNMPGLMYLNVAGNNLSDMDPD 343
N+F+N+ G+ L+++ NN+S PD
Sbjct: 675 NSFENLVGIQKLDISRNNMSGKIPD 699
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 27.9 bits (59), Expect = 4.4
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXXXXXXXFPAAGSE 197
NS G I P G+ +L ++++SNN L S P T GS
Sbjct: 546 NSFAGPI-PLEIGGLINLGSLSISNNRLTSNIPSTLGKCVLLESLHMEENLL----VGSI 600
Query: 198 NYFL-NASSVQELDVSYCNMSTS 263
+FL N S++ELD+S N+S S
Sbjct: 601 PHFLMNLRSIKELDLSSNNLSGS 623
>11_01_0631 -
5063622-5063635,5065050-5065203,5065280-5065441,
5065657-5066633,5067502-5067523
Length = 442
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 210 NASSVQELDVSYCNMSTSRQILSKICL 290
+A S+Q+L +S+C+ R ++IC+
Sbjct: 223 SAGSLQQLSISHCSFGAVRNFRTRICV 249
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 281 NMPGLMYLNVAGNNLSDMDPD 343
N+ L YLN++GN+LS PD
Sbjct: 95 NLTALTYLNLSGNSLSGRFPD 115
>04_04_1228 + 31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 216 SSVQELDVSYCNMSTSRQILSK 281
SS+QELDV YCN +Q S+
Sbjct: 1519 SSLQELDVGYCNNEKLKQRTSQ 1540
>01_06_0509 - 29921224-29924589
Length = 1121
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 6 VKIVNSTIGYIA---PNAFHGVHDLYAVNLSNNNLKSLHP-ETFA 128
+K++N + ++A P G+ L A+NLSNNN P E FA
Sbjct: 247 LKVLNLSFNHLAGVFPPDIAGLTSLNALNLSNNNFSGELPGEAFA 291
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 269 NTFKNMPGLMYLNVAGNNLSDMDPDTF 349
N++ P L YLN++ N+ D PD+F
Sbjct: 635 NSYAYHPMLTYLNLSHNSFRDSIPDSF 661
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 293 LMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLP 409
L YLN+ G ++SD+ P R+ H+K LP
Sbjct: 534 LRYLNIKGTDISDL-PCQIRELQYLETLDIRSTHVKELP 571
>04_04_1587 + 34630678-34632282
Length = 534
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 281 NMPGLMYLNVAGNNLSDMDPDTF 349
++PGL+ +N+AGN LS P ++
Sbjct: 200 SLPGLVQINLAGNRLSGEVPPSY 222
>02_01_0407 -
2963907-2964063,2965158-2965311,2965427-2968527,
2968684-2968697
Length = 1141
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 18 NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 116
N IG I P+A + +H L +N+SNN+L+ P
Sbjct: 610 NHLIGTI-PSALNNLHFLSKLNVSNNDLEGSIP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,534,311
Number of Sequences: 37544
Number of extensions: 194304
Number of successful extensions: 891
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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