Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1094
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)                 33   0.16 
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   29   1.9  
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)                   29   2.6  
SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
          Length = 575

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +3

Query: 18  NSTIGYIAPNAFHGVHDLYAVNLSNNNL 101
           N++I  IAP+AF G+ +L ++NL +NN+
Sbjct: 137 NNSISAIAPHAFKGLDNLQSLNLRHNNI 164


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 260 ITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPR 412
           I   TF+N+ GL  L +  NN++++D   F             N + +LPR
Sbjct: 203 IEPGTFRNLRGLEILYLNNNNITELDQRLFTRTPSLKLLFVSFNSLATLPR 253


>SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 434 FPRENVRCVGAI*CDCCGDLTLRDRVI 354
           F RE +R +  I C CC  +TLRDRV+
Sbjct: 194 FRREYMRYLSYI-CGCCDAVTLRDRVL 219


>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 12   IVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 125
            I N+ I  I    F  V DL  +NL NN + ++  +TF
Sbjct: 1120 IGNNLIKDIPSGVFANVRDLQVLNLHNNEITTIDEDTF 1157


>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
          Length = 1044

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 15  VNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 128
           V + I YI   AF    DL  +NL+NN ++ +    FA
Sbjct: 4   VRANIQYIDDFAFEKARDLVYINLANNPIEVIEEGAFA 41


>SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 310 NIQVHQTRHIFESICRDVLML 248
           ++QVH +RH+  ++C D+  L
Sbjct: 2   DVQVHLSRHLLRTVCTDITNL 22


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,599,608
Number of Sequences: 59808
Number of extensions: 233915
Number of successful extensions: 529
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)