Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1094
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical p...    35   0.034
Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical pr...    35   0.034
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    31   0.42 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    31   0.42 
Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.      29   2.2  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   2.2  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   2.2  
AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC006661-2|AAK31542.1|  253|Caenorhabditis elegans Spliceosome-a...    27   9.0  

>Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical
           protein T23G11.6a protein.
          Length = 653

 Score = 34.7 bits (76), Expect = 0.034
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 254 EYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLP 409
           E ITA  F  +  L  L++AGN +S ++PD F             N IK++P
Sbjct: 293 ENITAYAFDGLESLTRLSLAGNFISKLEPDVFFGLSSLEELDLGWNEIKTIP 344


>Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical
           protein T23G11.6b protein.
          Length = 616

 Score = 34.7 bits (76), Expect = 0.034
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 254 EYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLP 409
           E ITA  F  +  L  L++AGN +S ++PD F             N IK++P
Sbjct: 293 ENITAYAFDGLESLTRLSLAGNFISKLEPDVFFGLSSLEELDLGWNEIKTIP 344


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 36  IAPNAFHGVHDLYAVNLSNNNLKSLHPETF 125
           I P AF G+H+L+ + L  NN+  L  +TF
Sbjct: 326 IQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 36  IAPNAFHGVHDLYAVNLSNNNLKSLHPETF 125
           I P AF G+H+L+ + L  NN+  L  +TF
Sbjct: 326 IQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355


>Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical
           protein C44H4.2 protein.
          Length = 738

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 251 HEYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLP 409
           HE +    F N+P L YL ++GN ++ +    F            NN I ++P
Sbjct: 210 HE-LNRQAFLNVPSLRYLYLSGNKITKLTAYQFQTFEQLEMLDLTNNEIGAIP 261



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 18  NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 125
           NS +       F  ++ LY +NL +N + S+H  TF
Sbjct: 109 NSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTF 144



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 254 EYITANTFKNMPGLMYLNVAGNNLSDMDPDTF 349
           E + A  F N+P L  LN+AGN + +++   F
Sbjct: 186 EQLDALNFLNLPVLNLLNLAGNQIHELNRQAF 217


>U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical
           protein ZK682.5 protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 27  IGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 128
           +  +  + F G++DLY+++L  N + ++ P  FA
Sbjct: 342 LSQVRADFFEGLNDLYSIDLQGNRIDNVQPLGFA 375


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 130
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 130
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 6   VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 116
           + I +S + +I P+AF+ +  L  ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 130
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 130
           Q FP  P PL SQP QQQP  P     CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375


>AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical
           protein Y71F9B.8 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 6   VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 116
           + I +S + +I P+AF+ +  L  ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 6   VKIVNSTIGYIAPNAFHGVHD---LYAVNLSNNNLKSLHP 116
           + + ++ I Y+  NAF   H    L  ++LS NNL ++HP
Sbjct: 137 LSLPDNLIEYVQDNAFLSYHSRDSLLKLDLSANNLTAIHP 176



 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 3   TVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 125
           ++ I N+ I  +   AF G   +  + L NN L+S HP TF
Sbjct: 63  SLTISNTPIEKMPGYAFQGFQ-IKKLFLRNNGLRSFHPNTF 102


>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 251 HEYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSL 406
           HE I  +TF  +PGL  ++++ N+L  + P               NN + +L
Sbjct: 84  HE-IPGSTFLPLPGLEVIDLSNNHLETLPPTVLRSLKFLRVLILSNNRLSNL 134


>Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical
           protein M88.6b protein.
          Length = 594

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 18  NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 110
           N  +  I   AF G++ L  + LSNNNL+++
Sbjct: 208 NCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238


>Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical
           protein M88.6a protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 18  NSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 110
           N  +  I   AF G++ L  + LSNNNL+++
Sbjct: 208 NCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical
           protein K07A12.2 protein.
          Length = 961

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 260 ITANTFKNMPGLMYLNVAGNNLSDMD 337
           I A   +N   LMYL++  NN+S+++
Sbjct: 190 IPAQILRNAANLMYLDLGSNNISEIN 215


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 249 YSMKHQALVQR----KRSRSNFRTQLQEI*GDCLKALEVTASYCSQT 121
           YS+KH A +      + SR +  T LQE    CL A E ++SY  +T
Sbjct: 800 YSLKHSAQLGGFSYFQESRLHKLTNLQEKMQICLNAYEQSSSYLPET 846


>AC006661-2|AAK31542.1|  253|Caenorhabditis elegans
           Spliceosome-associated proteinprotein 1 protein.
          Length = 253

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   TVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 110
           T+ + N+ I YIAP+    + +L  + L+NNN+  L
Sbjct: 68  TLYLHNNRINYIAPDIATKLPNLKTLALTNNNICEL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,033,646
Number of Sequences: 27780
Number of extensions: 178205
Number of successful extensions: 476
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)