Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1093
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 118 6e-28
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 62 3e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 62 5e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 2e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.003
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.35
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.35
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 28 0.80
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.8
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.2
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 7.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 9.8
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 24 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 118 bits (283), Expect = 6e-28
Identities = 51/52 (98%), Positives = 51/52 (98%)
Frame = +3
Query: 255 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 410
GQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 99
Score = 96.7 bits (230), Expect = 2e-21
Identities = 41/49 (83%), Positives = 47/49 (95%)
Frame = +1
Query: 118 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 264
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGM ++
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 62.5 bits (145), Expect = 3e-11
Identities = 23/58 (39%), Positives = 42/58 (72%)
Frame = +3
Query: 240 RDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEG 413
+ G KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P G
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100
Score = 48.0 bits (109), Expect = 7e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 124 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 228
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 61.7 bits (143), Expect = 5e-11
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 258 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPE 410
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPE 104
Score = 55.2 bits (127), Expect = 5e-09
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 136 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 246
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.6 bits (113), Expect = 2e-07
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 264 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 410
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 136 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 219
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 121 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 222
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 306 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 407
+ +K I +G V NWD +W + +L+ P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNP 96
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 121 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 222
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 261 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 407
++ YV DE Q I + +K +GI+ +W+ W +L+V P
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNP 99
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 136 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 231
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 33.5 bits (73), Expect = 0.016
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 240 RDGRYGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTF 383
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF 106
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 0.35
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 353 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLSIPTITP*WRGLPTIEGNTARGASSPAK 174
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 173 PALHIP 156
P L+ P
Sbjct: 123 PQLNSP 128
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 29.1 bits (62), Expect = 0.35
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 318 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEGNNPQS 428
YP G++ +W ++E + E+R+ P+G+ P +
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPKGSMPST 280
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.9 bits (59), Expect = 0.80
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 446 LKGFEAGLGVVSLGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSF 294
L G+ V+ +GG +++ V ++ + +V +GV G TSF
Sbjct: 401 LAKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVLPGAGTSF 451
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 291 SVPHLLHKSPSVHTDHHALMAGPSHDRGEH 202
+VP L P+ HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.8
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 251 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 117
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 379 PSTMSCVSPPRETTPSPASKPLRGLPPL 462
PST S +S TPS S+ RGL PL
Sbjct: 534 PSTSSNLSIAGSLTPSKTSRIYRGLAPL 561
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 163 TYRSHCLLPTRQLLRRTS*ISEI 95
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 3.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 321 PIEHGIVTNWDDMEKIWHHTF 383
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 7.4
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 138 QRGNFFVAHLEL-VKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPC 1
++ +F ++E V+++ CRC K P ++ + + CPC
Sbjct: 486 EKRKYFEINIETPVRILSCRCVKDSTLLPPYESSSQGDNQVLLPCPC 532
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 136 LVVDNGSGMCKAGFAG 183
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 181 GDDAPRAVFPSIVGRPRHQGVMVGM 255
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 379 PSTMSCVSPPRETTPSPASKPLRGLPPL 462
P MS V PP P PA P PPL
Sbjct: 1709 PPPMS-VPPPPSAPPMPAGPPSAPPPPL 1735
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +1
Query: 376 IPSTMSCVSPPRETTPSPASKPLRGLPP 459
+P S PPR P+ ++ LPP
Sbjct: 1 MPRRRSAAPPPRRAAPARSASTAAALPP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,244
Number of Sequences: 5004
Number of extensions: 47170
Number of successful extensions: 137
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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