Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1093
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   2.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   4.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 382 STMSCVSPPRETTPS 426
           S ++C  PPR+T PS
Sbjct: 388 SCVACSPPPRQTPPS 402


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 222 KAPPSGRDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 356
           K  P G  G  G+K      E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 222 KAPPSGRDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 356
           K  P G  G  G+K      E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 382 STMSCVSPPRETTPSPASKPLRGLPPL 462
           +  SC SPP  T      +    LPPL
Sbjct: 614 TNQSCPSPPVTTKRDGTQETEERLPPL 640


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 279 LLHKSPSVHTDHHALMAGPSHDRGEHGARSIISCETGLA 163
           +L K P V T    +    + D GEH   ++   E GLA
Sbjct: 113 ILEKKPDVTT----VELVDATDPGEHNGDTVTDVEAGLA 147


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 66  IKRPAVTANREKQIPIAGR 10
           IK P + ANR K   IAG+
Sbjct: 284 IKLPKLAANRAKLEEIAGK 302


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 157 GMCKAGFAGD 186
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 216 DRGEHGARSIISCETGLA 163
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 407 RGKQPPVLLQN 439
           RG  PPV+L+N
Sbjct: 233 RGVMPPVILEN 243


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 407 RGKQPPVLLQN 439
           RG  PPV+L+N
Sbjct: 233 RGVMPPVILEN 243


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 28  LFLTVSSHCRAFNFHLV 78
           L + V+S C+AF +H V
Sbjct: 284 LRMGVASFCKAFPWHFV 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,122
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)