Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1092
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   2.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   4.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.1  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    25   6.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   8.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 21   YLQKGFQFVSKKLDRTSLFNVLITY 95
            Y Q   + + K L R+ LFNVL TY
Sbjct: 3640 YHQTSLREIKKWLRRSELFNVLFTY 3664


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 428  ELKKVTHQTEFRGKKKI 478
            +LKKV  +TEFR K KI
Sbjct: 1662 KLKKVVAETEFRSKAKI 1678


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 401 HVTSSDLFCPLAQPSITVLKYSTSSFLLTLLIKASRSKFSKTSSKYNS 258
           +++SS +    + PS +     TSS L T  I ++ S  S TSS  +S
Sbjct: 209 YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSS 256


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 217 DNENYKSAANGRIMELYFEEVFENLDR 297
           +N N     NG++ E+  +E  EN+DR
Sbjct: 26  NNLNIPEPINGKVQEIDTKESLENVDR 52


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 151 LHYEFETFTNVCQVFSLFLYVIKTLNNEVLSN 56
           L Y+  TFT VCQ        ++T N   L +
Sbjct: 880 LRYKGLTFTGVCQAVKFSFQCLRTRNTRKLDH 911


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,681
Number of Sequences: 5004
Number of extensions: 40369
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)