Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1092
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine re...    28   3.2  
AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine re...    28   3.2  
U46671-1|AAA85747.1|  364|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    27   7.3  

>AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform a protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -1

Query: 383 LFCPLAQPSITVLKYSTSSFLLTLLIKASRSKFSK---TSSKYNSMMRPFAADL*FSLSI 213
           +F P+   S+ ++K  +S+F   LLI    S +S    + +++ S++ P   D  FS+S 
Sbjct: 41  IFSPMCFFSVEIMKTYSSAFGHILLIAYDISTYSHLCISLNRFCSIVAPIKYDTIFSMSN 100

Query: 212 *KKHTFVKH*ILMIPNF 162
            KK         ++P+F
Sbjct: 101 TKKLIMFSWACAVLPSF 117


>AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform b protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -1

Query: 383 LFCPLAQPSITVLKYSTSSFLLTLLIKASRSKFSK---TSSKYNSMMRPFAADL*FSLSI 213
           +F P+   S+ ++K  +S+F   LLI    S +S    + +++ S++ P   D  FS+S 
Sbjct: 52  IFSPMCFFSVEIMKTYSSAFGHILLIAYDISTYSHLCISLNRFCSIVAPIKYDTIFSMSN 111

Query: 212 *KKHTFVKH*ILMIPNF 162
            KK         ++P+F
Sbjct: 112 TKKLIMFSWACAVLPSF 128


>U46671-1|AAA85747.1|  364|Caenorhabditis elegans Hypothetical
           protein C14E2.2 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 316 VKRKELVEYFNTVIDGCAKGQNKSDDVTCKKFL 414
           +KRK L  +F+    GCA G   +D    + F+
Sbjct: 161 IKRKRLFPFFDISYQGCASGDPAADSWAIRHFV 193


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
 Frame = +1

Query: 217 DNENYKSAANGRIMELYFEEVFENLDRDALISRVKRKE---LVEYFNTVIDGCAKGQNKS 387
           +N++  S+ +    +   + V  NL   + ++ + +++   L    NT  D  +K  N  
Sbjct: 709 NNKSSSSSPSTSTHQTPIQRVASNLGSSSFVASLTQEQANCLQNAMNTAKDEMSK--NNE 766

Query: 388 DDVTCKKFLVFCQRIKKSNPPNRIPGEKKNSPF 486
           DD    +FL+    I+K+ PP  +P    NSPF
Sbjct: 767 DD----EFLL--DEIRKT-PPKEVPRSYNNSPF 792


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,185,885
Number of Sequences: 27780
Number of extensions: 221981
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)