Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1092
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   4.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   4.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.3  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -3

Query: 414 QKLFACYIV*LILS--FSTAVDNSIEIFNKFLPFDSTDQSITI*IFENLFKIQFHDASIC 241
           + +F  +++ LI +  F+T VD +   + +    +S + +I   + EN+ +   +  S  
Sbjct: 152 RSIFGAWLIALIFAMPFATYVDINYVEYPQNSKRNSEESAICAMLKENMPEFPLYQLSCI 211

Query: 240 SRFIIFVVHLKKTYFRETLNFNDPKL 163
             F+I +V +   Y R  L      L
Sbjct: 212 LFFLIPMVFIAVLYIRIGLRIQSDSL 237


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 413 WFSVSELKKVTHQTEFRGKKK 475
           WF+ +E +K  H  E   KKK
Sbjct: 92  WFTTNEPEKWNHFVEIMIKKK 112


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 413 WFSVSELKKVTHQTEFRGKKK 475
           WF+ +E +K  H  E   KKK
Sbjct: 92  WFTTNEPEKWNHFVEIMIKKK 112


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 285 FENLFKIQFHDASICSRFIIFVVHLKKTYFRETL 184
           F+N  K+ FH+ SI + + +++ H K   +   L
Sbjct: 94  FKNAKKVTFHEMSIPNHY-LWLYHDKTLLYMSKL 126


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 217 DNENYKSAANGRIMELYFEEVFENLDR 297
           +N NYK   N    +LY++    N+++
Sbjct: 325 NNNNYKYNYNNYNKKLYYKNYIINIEQ 351


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 335 LNISILLSTAVLKDRISQTM 394
           L ++ILLS  V  + +++TM
Sbjct: 265 LGVTILLSLTVFLNMVAETM 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,517
Number of Sequences: 438
Number of extensions: 2843
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)