Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1092
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66600.1 68414.m07568 WRKY family transcription factor contai...    28   2.9  
At5g45390.1 68418.m05578 ATP-dependent Clp protease proteolytic ...    27   9.0  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    27   9.0  
At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putat...    27   9.0  
At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putat...    27   9.0  
At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putat...    27   9.0  

>At1g66600.1 68414.m07568 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 241

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = +1

Query: 277 VFENLDRDALISRVKRKELVEYFNTVIDGCAKGQNKSDDVTCKKFLVFCQRIKKSNPPNR 456
           +F N+D  A+ + +  +       TV+D C      ++ +       F   +   N PNR
Sbjct: 1   MFSNIDHKAVAALLHGQGCANILKTVLDNCKVSSVSTEPLINTILDSFSLALSSVNSPNR 60

Query: 457 IPGEKKNS 480
            P  + +S
Sbjct: 61  QPHHESSS 68


>At5g45390.1 68418.m05578 ATP-dependent Clp protease proteolytic
           subunit (ClpP4) identical to nClpP4 GI:5360593 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 214 MDNENYKSAANGRIMELYFEEVFENLDRDALISRVKRKELVEY--FNTVIDG 363
           M N+N  ++         FE+V +++DRD  +S +   E VEY   + VIDG
Sbjct: 204 MHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPI---EAVEYGLIDGVIDG 252


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 364 CAKGQNKSDDVTCKKFLVFCQRIKKSNPPNRIPG 465
           C KG+ K D  + ++ L  C +   ++ P  +PG
Sbjct: 535 CTKGKAKKDPTSLRRSLRSCNKKTTNSKPEILPG 568


>At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative strong similarity to
           SP|P50433 Serine hydroxymethyltransferase, mitochondrial
           precursor (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
           contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 533

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 21  YLQKGFQFVSKKLDRTSLFNVLITYRKRENT 113
           +L  G+Q  +KK+   S+F   + YR  ENT
Sbjct: 177 HLSHGYQTDTKKISAVSIFFETMPYRLDENT 207


>At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative strong similarity to
           SP|P50433 Serine hydroxymethyltransferase, mitochondrial
           precursor (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
           contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 533

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 21  YLQKGFQFVSKKLDRTSLFNVLITYRKRENT 113
           +L  G+Q  +KK+   S+F   + YR  ENT
Sbjct: 177 HLSHGYQTDTKKISAVSIFFETMPYRLDENT 207


>At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative strong similarity to
           SP|P50433 Serine hydroxymethyltransferase, mitochondrial
           precursor (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
           contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 517

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 21  YLQKGFQFVSKKLDRTSLFNVLITYRKRENT 113
           +L  G+Q  +KK+   S+F   + YR  ENT
Sbjct: 177 HLSHGYQTDTKKISAVSIFFETMPYRLDENT 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,174,250
Number of Sequences: 28952
Number of extensions: 189602
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)