Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1091
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 100 1e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 4e-08
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 50 2e-07
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 38 0.001
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 36 0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.033
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.92
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 3.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 4.9
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 6.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 100 bits (240), Expect = 1e-22
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 329 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 57.6 bits (133), Expect = 1e-09
Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
Frame = -2
Query: 396 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 274
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 4e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -2
Query: 384 SVWIGGSILASLSTFQQMWISKQEYDESG 298
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/47 (46%), Positives = 36/47 (76%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
I A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 334 IYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -2
Query: 399 PERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 298
P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 344 PRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 280
+I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 376 VISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.033
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -3
Query: 443 QFSDNEDF*KESLLLQRGSTPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 291
Q ++N DF K + L + TP + PPS+PS+R R S ++ APP
Sbjct: 205 QIAENADFVK-AYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 378 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 277
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 451 GPPNFPTMKIFKRNHCSSREEVLRMDRWIDPRLPLYLPTDVDLETGVR 308
G P FPT+ F + + E+LR R +D TD+ LE ++
Sbjct: 650 GAPPFPTLDWFTNDSSVIQNELLR--RSVDTYFRYIFQTDLKLEQRIK 695
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -1
Query: 373 RWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVL----LNAPRVLPP 245
+W+D YLP V L TG W + C L L R+LPP
Sbjct: 629 KWMD-----YLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSRLLPP 670
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 319 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 405
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 351 LSTFQQMWISKQEYDESGPSIV 286
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,555
Number of Sequences: 5004
Number of extensions: 35200
Number of successful extensions: 87
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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