Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1091
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_56| Best HMM Match : Actin (HMM E-Value=0) 105 3e-23
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 105 3e-23
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 6e-23
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 6e-23
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 95 3e-20
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 46 2e-05
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 29 2.2
SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18) 29 2.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 105 bits (251), Expect = 3e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 105 bits (251), Expect = 3e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 105 bits (251), Expect = 3e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 105 bits (251), Expect = 3e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 103 bits (248), Expect = 6e-23
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 292 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 103 bits (248), Expect = 6e-23
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 303 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 95.1 bits (226), Expect = 3e-20
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 103 VIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = -2
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 259
+I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 294 VISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 37.5 bits (83), Expect = 0.006
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -2
Query: 402 PPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 298
PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 364 PPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -2
Query: 396 ERKYSVWIGGSILASL 349
E++++ WIGGSILASL
Sbjct: 215 EKRFNPWIGGSILASL 230
>SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18)
Length = 855
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 368 PPIHTEYFLSGGAMIPFKNLHCRKIGGAEGSP 463
PP YF G A++P + +HC+++ + P
Sbjct: 21 PPSTLLYFTQGIALLPTRLVHCQRVSNSVSPP 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,987
Number of Sequences: 59808
Number of extensions: 288758
Number of successful extensions: 688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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