Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1090
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   6.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   6.3  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   6.3  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    24   8.4  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 47  KQYYSTNKYLIFTKISSYN 103
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 47  KQYYSTNKYLIFTKISSYN 103
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 20  INNKYNVDCKQYYSTN 67
           I N  N++CK+ YSTN
Sbjct: 356 IKNISNINCKEAYSTN 371


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 266 LR*LKVRCAICRTIRKETSNACYSPLFRKSIIIRLQMSP 150
           LR LK+  ++ R+IR   SN C + L R +  ++L  +P
Sbjct: 4   LRVLKIFRSVSRSIRIPASNGCIN-LGRNAYRVQLAKAP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,559
Number of Sequences: 5004
Number of extensions: 27964
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)