Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1089
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8; Plasm...    34   1.2  
UniRef50_Q5AHZ0 Cluster: Potential mitochondrial protein Fmp47; ...    34   1.6  
UniRef50_Q83DA1 Cluster: Conserved domain protein; n=4; Coxiella...    33   2.9  
UniRef50_A0DJ74 Cluster: Chromosome undetermined scaffold_52, wh...    33   2.9  
UniRef50_O17174 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  
UniRef50_Q97U76 Cluster: Permease; n=1; Sulfolobus solfataricus|...    31   8.8  

>UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8;
           Plasmodium|Rep: DNA-directed RNA polymerase - Plasmodium
           falciparum (isolate 3D7)
          Length = 1450

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 24  NNKYNVDCKQYYSTNKYLIFTKISSYNF*DISHNSY-TLKRQLLETFVVLLLCSYETRVS 200
           NNK  +D K YY   +  +  ++ S  F D+    Y TLK+Q+ +T    +  +Y +++ 
Sbjct: 575 NNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLR 634

Query: 201 NT 206
           +T
Sbjct: 635 ST 636


>UniRef50_Q5AHZ0 Cluster: Potential mitochondrial protein Fmp47; n=1;
            Candida albicans|Rep: Potential mitochondrial protein
            Fmp47 - Candida albicans (Yeast)
          Length = 1179

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 60   STNKYLIFTKISSYNF*DISHNSYTLKRQLLETFVVL--LLCS 182
            S + Y+I  +I +Y F  +S  SYTLK Q+++T  +L  LLC+
Sbjct: 963  SKDIYMISLRIFNYGFTLVSQESYTLKTQIIKTLRLLLPLLCT 1005


>UniRef50_Q83DA1 Cluster: Conserved domain protein; n=4; Coxiella
           burnetii|Rep: Conserved domain protein - Coxiella
           burnetii
          Length = 494

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 6   HRQSLINNKYNVDCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLLETFVVLLLCSY 185
           H +SL  ++  V CK  +  N ++IF  I  +NF  I+   + L   L+  ++++ L ++
Sbjct: 259 HYKSLTFSEIMVQCKHIFHINYWIIFLAIGMWNFNSINPLQHFLMFFLIGIYILVFLVTF 318


>UniRef50_A0DJ74 Cluster: Chromosome undetermined scaffold_52, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_52, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1841

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 33   YNVDCKQYYSTNKYLIFTKISSY 101
            YN +CK++ S  KY  FT ISSY
Sbjct: 999  YNFECKEFSSQLKYTFFTSISSY 1021


>UniRef50_O17174 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 386

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 42  DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 152
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>UniRef50_Q97U76 Cluster: Permease; n=1; Sulfolobus
           solfataricus|Rep: Permease - Sulfolobus solfataricus
          Length = 417

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 72  YLIFTKISSYNF*DISHNSYTLKRQLLETFVVLLLCSYETRVSNTRLKSP---FVSSCKL 242
           ++I T I SYN+ +I      L   L+  F  L+  S   R +  R+KSP    +SS K 
Sbjct: 167 FIIITVIGSYNYIEIGWRIMFLTSLLILPFGFLMPESLRFRRNKERVKSPAKLLISSYKR 226

Query: 243 HIVLVTTV 266
             +L +T+
Sbjct: 227 QFILSSTL 234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,219,952
Number of Sequences: 1657284
Number of extensions: 6662111
Number of successful extensions: 13569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13554
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)