Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1089
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)                     28   4.1  
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)         27   5.4  
SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)            27   7.2  
SB_49293| Best HMM Match : DUF937 (HMM E-Value=5.6)                    27   9.5  
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)
          Length = 111

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -1

Query: 246 CAICRTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMCNCYE 118
           C   +  + +   + + P F ++   +L+ +PA  F+ C C+E
Sbjct: 69  CVSKQAQQTQAKKSTHRPTFNQTFTFKLRGAPADLFNDCVCFE 111


>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
          Length = 229

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 341 NPTKXXXXXIVYFYNIVLSRLTHVNYGSYKYDVQF 237
           +PTK       YF+N+  S+  HV +   K D+ +
Sbjct: 92  DPTKMFWTPDTYFWNVKRSKYHHVTHAYTKNDLDY 126


>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
          Length = 479

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 135 LKRQLLETFVVLLLCSYETRVSNTRLKSPFVSSCKLHIVLVTTVI 269
           L R+LLE  VVL L  +  RVS    K+  +S C  H+ +   VI
Sbjct: 104 LGRELLERLVVLTLFCFVERVS----KAAALSVCFAHVWITVIVI 144


>SB_49293| Best HMM Match : DUF937 (HMM E-Value=5.6)
          Length = 315

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = +3

Query: 33  YNVDCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLLETFVVLLLCSYETRVSNTR 209
           + ++C+ Y+++ KYL+   +  + +  +  N+  L R LL TF+VLL      R +NTR
Sbjct: 243 FKLNCR-YFTSVKYLL-ASMGKHLY--LWKNTDKLCRLLLFTFLVLLASVRPRRNNNTR 297


>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 24  NNKYNVDCKQYYSTNKYLIFTKISSYN---F*DISHNSYT 134
           NN Y +D K   S N Y I  K +S N       S+N+YT
Sbjct: 75  NNNYTIDNKDNSSNNNYTINNKNNSRNNNYTISTSNNNYT 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,367
Number of Sequences: 59808
Number of extensions: 228360
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)