Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1089
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic mul...    31   0.29 
AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical...    31   0.29 
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC006714-20|AAK29723.2|  281|Caenorhabditis elegans Serpentine r...    27   6.3  
AC006714-16|AAK29721.3|  281|Caenorhabditis elegans Serpentine r...    27   6.3  

>DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic
           multivulva protein LIN-8 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 42  DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 152
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical
           protein B0454.1 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 42  DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 152
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 339 SYKNNNYIDCLFL*YCFVALDACELR*LQVRCAICRTIRKETS 211
           +YK+     C  + +C   ++AC  R  +V+C ICR++  + S
Sbjct: 27  TYKDPILSTCFHI-FCRSCINACFERKRKVQCPICRSVLDKRS 68


>AC006714-20|AAK29723.2|  281|Caenorhabditis elegans Serpentine
           receptor, class z protein9 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -1

Query: 339 SYKNNNYIDCLFL*YCFVALDACELR*LQVRCAICRTIRKETSNACY-SPLFRKSIIIRL 163
           S + N YI C F+    + +  C +   +V+  I    +    + C+ +P+F K  I  L
Sbjct: 184 SAQRNKYILCQFILVVIMKITCCIMSLFRVQATIHEVFQAAELSDCFLTPVFIK--ISYL 241

Query: 162 QMSPATAFSMCNCYEIC 112
                +  + C C   C
Sbjct: 242 MYHRPSFKTFCKCLNCC 258


>AC006714-16|AAK29721.3|  281|Caenorhabditis elegans Serpentine
           receptor, class z protein8 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -1

Query: 339 SYKNNNYIDCLFL*YCFVALDACELR*LQVRCAICRTIRKETSNACY-SPLFRKSIIIRL 163
           S + N YI C F+    + +  C +   +V+  I    +    + C+ +P+F K  I  L
Sbjct: 184 SAQRNKYILCQFILVVIMKITCCIMSLFRVQATIHEVFQAAELSDCFLTPVFIK--ISYL 241

Query: 162 QMSPATAFSMCNCYEIC 112
                +  + C C   C
Sbjct: 242 MYHRPSFKTFCKCLNCC 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,459,852
Number of Sequences: 27780
Number of extensions: 178529
Number of successful extensions: 394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)