Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1087
         (469 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.46 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.61 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   2.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   4.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    20   9.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    20   9.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.46
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 263 SPVVATTYHGKTPLLASTSYSFFDSFNLATYCVFCSFYQEALST 394
           SP +A+  +  +   +  S +  DSF L  +  +CS  Q  LST
Sbjct: 202 SPTIASATYTNSANSSIWSPASIDSFTLEQHRSWCSSSQPVLST 245


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 62  AWSLLDASRDVPNNCGFSG 118
           A SL++++R+VP  C F+G
Sbjct: 735 ATSLVESNRNVPQKCIFNG 753


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 117 PEKPQLLGTSREASRRLQAQQPRQLIKHT 31
           PEK    G +   S   QA QP   I+H+
Sbjct: 117 PEKGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 362 FCSFYQEALSTMARELH 412
           FC FYQ  L  +  +LH
Sbjct: 96  FCLFYQNKLIEVISKLH 112


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 156 HPSPLVYSTPYGYT 197
           H S   Y  PYGYT
Sbjct: 38  HYSNYHYEDPYGYT 51


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 156 HPSPLVYSTPYGYT 197
           H S   Y  PYGYT
Sbjct: 38  HYSNYHYEDPYGYT 51


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 156 HPSPLVYSTPYGYT 197
           H S   Y  PYGYT
Sbjct: 38  HYSNYHYEDPYGYT 51


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 171 VYSTPYGYTHFIK 209
           VYS+  GYT +++
Sbjct: 143 VYSSSVGYTQYVR 155


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 152 DAAGQLTDSCRSRRNHS 102
           + AG++ D C  +R HS
Sbjct: 9   ETAGEVLDLCVRKRPHS 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,690
Number of Sequences: 336
Number of extensions: 2132
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)