Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1087
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   1.9  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   3.3  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   3.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   4.4  

>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 303 SWLRPPTVSSIPLISQPIAYSAHFIKKRSPQWPVSYI 413
           ++L PP   S P  +Q    S ++IK R+P  PV+++
Sbjct: 59  NFLFPPIAISDPKEAQNHCSSYYYIKYRTPDSPVTHL 95


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 300 LSWLRPPTVSSIPLISQPIAYSAHFIKKRSPQWPVSYIPAFPS 428
           LSW RPP+++ +P              K+S  WP    P +PS
Sbjct: 241 LSWARPPSMALLP-------------SKQSTYWPALAAPVYPS 270


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 276 QPPTTVKLLSWLRPPTVSSIPLISQPIAYSAHFIKKRSPQWPVSYIPAFPSSYQFNF 446
           QPP   + LS   PP   + P++     Y    + +R P    S +P+  S+YQ  +
Sbjct: 169 QPPPKRRTLS--PPPRRLADPVVVGSSRYVEEEVYRRPPYTLASEVPSSASAYQAGY 223


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 305 LASTSYSFFDSFNLATYCV 361
           + S  Y FFDS    +YCV
Sbjct: 452 MLSERYGFFDSIKFGSYCV 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,227
Number of Sequences: 5004
Number of extensions: 33677
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)