Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1087
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0546 - 34646946-34647289,34647542-34647608                       28   3.3  
11_04_0443 - 17808897-17809110,17809169-17813652                       27   10.0 
07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974     27   10.0 
05_07_0282 + 28934359-28936458                                         27   10.0 
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885...    27   10.0 

>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 197 SFH-QEEVCCTCCVYRSCI 250
           SFH  E+ CC CCV+  C+
Sbjct: 79  SFHLPEDPCCDCCVHALCL 97


>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 318 PTVSSIPLISQPIAYSAHFIKKRSPQWPVSYIPAFPSSYQFNFPKTT 458
           PT  SI   SQ          K+  QW +S+   FPS  QF  P +T
Sbjct: 440 PTFWSIYKASQSSGRLCISSHKKYIQWLISWNQEFPSCNQFFMPLST 486


>07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974
          Length = 392

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 154 TTLLASLLIVVDPGETTVVRDVTGGVKKTPGS 59
           T LLA+LL+     + TV  D  GGV   P S
Sbjct: 10  TALLATLLVAASFQDLTVAADGGGGVVPVPDS 41


>05_07_0282 + 28934359-28936458
          Length = 699

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 106 WFLRDLQLSVSWPAASCIPHPWSTLHRMATLISSRRGLLHMLRISLL 246
           W L  L      P +S  P      HR+A L+++ RG LH   + L+
Sbjct: 189 WLLSQLLDERKGPTSSPEPPLTRQEHRLADLLAAPRGKLHPASVLLM 235


>01_06_0868 -
           32587618-32587875,32588239-32588318,32588518-32588583,
           32589896-32590523
          Length = 343

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 309 LRPPTVSSIPLISQPIAYSAHFIKKRSPQWPVSYIPAFPSS 431
           L P + S+ P  +QP  +   + +   P WP S +  FPSS
Sbjct: 81  LTPSSASASPRRAQP--WGRTWARPPGPTWPRSDLGGFPSS 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,675,334
Number of Sequences: 37544
Number of extensions: 249310
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)