Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1087
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)                    36   0.017
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_51400| Best HMM Match : Kinesin (HMM E-Value=0)                     27   5.9  
SB_39336| Best HMM Match : Kinesin (HMM E-Value=0)                     27   5.9  
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)            27   7.7  

>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
          Length = 406

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 315 PPTVSSIPLISQPIAYSAHFIKKRSPQWPVSYIPAFPSSYQFNFPKTTP*P 467
           PP   S  L S P +Y A +       +P SY  ++P+SY  ++P  +P P
Sbjct: 56  PPYQYSAYLASYPSSYPASYPASYPASYPASYPASYPASYPTSYPYPSPYP 106


>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 275 ATTYHGKTPLLASTSYSFFDSFNLATYCVFCSFYQEALS 391
           AT+Y+  T    +TSY+   S+N AT C   + Y  A S
Sbjct: 411 ATSYNNATSCNGATSYNSATSYNNATSCNDATSYNNATS 449


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +3

Query: 279  PPTTVKLLSWLRPPTVSSI-----PLISQPIAYSAHFIKKRSPQWPVSYIPAFPSSYQ 437
            PPTT+   SW +P  V S+     P I QP            P +P S +  FP S Q
Sbjct: 926  PPTTLTTPSWSQPVPVPSMYQPQPPGIMQPPTSIPPSQPMAPPSFPPSSMGGFPPSSQ 983


>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1706

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +3

Query: 201 FIKKRSXXXXXXXXXXSYLLFLPS*QPPTTVKLLSWLRPPTVSSIPLISQPIAYSAHFIK 380
           F+++R           SYL F P  Q  T V++   ++ P  SS   I +P++ +     
Sbjct: 294 FMEQRDLFLGVDGADNSYLYF-PIFQT-TDVRIYKHVQLPDPSSSKDIEEPVSPAPPKKP 351

Query: 381 KRSPQWPVSYIPAF-PSSYQFNFPKTTP*P 467
           +RSP  P    PA+ P S +    + +P P
Sbjct: 352 RRSPSKPAIPAPAYKPRSSRLRQLRDSPAP 381


>SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 269 VVATTYHGKTPLLASTSYSFFDSFNLATYCVFCSFYQEAL 388
           ++ T+YH   PL    S ++F +FN A      SF Q+AL
Sbjct: 292 LLQTSYHDTAPLTRGISGTYFKAFNFAKKKTQISF-QDAL 330


>SB_51400| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 455

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 163 EGCTTLLASL--LIVVDPGETTVVRDVTGGVKKTPGSAAATA-NKAHTINL 20
           EG   LL++L  ++ VDP   TV  DVT G+    G +  TA N+   +NL
Sbjct: 147 EGMYDLLSTLPGVLPVDPSTMTVSEDVT-GLTHVKGLSVHTAINEEEALNL 196


>SB_39336| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 558

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 163 EGCTTLLASL--LIVVDPGETTVVRDVTGGVKKTPGSAAATA-NKAHTINL 20
           EG   LL++L  ++ VDP   TV  DVT G+    G +  TA N+   +NL
Sbjct: 147 EGMYDLLSTLPGVLPVDPSTMTVSEDVT-GLTHVKGLSVHTAINEEEALNL 196


>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
          Length = 449

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 166 PWSTLHRMATLISSRRGLLHMLRISLLHHTC 258
           PW T HR A   +   G  H +  S+ H  C
Sbjct: 359 PWRTAHRQAYFTNRATGETHTIGFSVQHLFC 389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,314
Number of Sequences: 59808
Number of extensions: 275223
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)