Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1087
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U40956-4|AAA81759.1|  262|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U11029-2|AAA19242.2|  432|Caenorhabditis elegans Cam kinase kina...    27   6.7  
U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kina...    27   6.7  
AB016838-1|BAA77824.4|  432|Caenorhabditis elegans Ca2+/calmodul...    27   6.7  
U97008-9|AAB52314.2|  434|Caenorhabditis elegans Cytochrome p450...    27   8.9  

>Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical
           protein C39B10.1 protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +2

Query: 203 HQEEVCCTCCVYRSCIIPAISPVVATTYHGKTPLLASTSYSFFDSFNLATYCVFCSFYQE 382
           H   +C    +Y  C +      + +  +  TP+    SY  F     A++CV C+ +Q 
Sbjct: 82  HLGMICFWDIIYLLCCLSTYC--IPSLIYSVTPIYGPFSYILFFLQPFASFCVSCTIWQV 139

Query: 383 ALSTMAREL 409
              T+ R L
Sbjct: 140 FAITLERYL 148


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 381 KRSPQWPVSYIPAFPSSYQF-NFPKTTP*P 467
           K SPQ P    P+ PS+++F  +PK+T  P
Sbjct: 174 KMSPQSPKPTYPSVPSTFEFEKYPKSTEEP 203


>Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical
           protein C56G7.3 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 320 YSFFDSFNLATYCVFCSFYQEALSTMA 400
           Y FF + + +  C FCS Y+    T+A
Sbjct: 260 YPFFSALHASAMCRFCSIYKSQKCTLA 286


>U40956-4|AAA81759.1|  262|Caenorhabditis elegans Hypothetical
           protein ZK402.1 protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 378 KKRSPQWPVSYIPAFPSSYQFNF 446
           ++++P++P  Y P FPS+  ++F
Sbjct: 153 EEKTPRFPSQYFPIFPSTISYHF 175


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 275 ATTYHGKTPLLASTSYSFFDSFNLATYCVFCSFYQEALSTMAREL 409
           +T  +GKT   +STS      F+  TYCV CS  QE    +  ++
Sbjct: 617 STIPYGKTSGPSSTSTQV-GIFSYHTYCVHCSVDQEVSDDLKEKI 660


>U11029-2|AAA19242.2|  432|Caenorhabditis elegans Cam kinase kinase
           protein 1, isoforma protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 376 IK*AEYAIGCEIKGIEETVGGRSQERSFTVVGGCYDGRNSRY 251
           +K A++ + CE +GI+  + G +   +F       +G N  Y
Sbjct: 181 VKIADFGVSCEFEGIDAFLSGTAGTPAFMAPEALTEGANHFY 222


>U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kinase
           protein 1, isoformb protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 376 IK*AEYAIGCEIKGIEETVGGRSQERSFTVVGGCYDGRNSRY 251
           +K A++ + CE +GI+  + G +   +F       +G N  Y
Sbjct: 261 VKIADFGVSCEFEGIDAFLSGTAGTPAFMAPEALTEGANHFY 302


>AB016838-1|BAA77824.4|  432|Caenorhabditis elegans
           Ca2+/calmodulin-dependent proteinkinase kinase protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 376 IK*AEYAIGCEIKGIEETVGGRSQERSFTVVGGCYDGRNSRY 251
           +K A++ + CE +GI+  + G +   +F       +G N  Y
Sbjct: 181 VKIADFGVSCEFEGIDAFLSGTAGTPAFMAPEALTEGANHFY 222


>U97008-9|AAB52314.2|  434|Caenorhabditis elegans Cytochrome p450
           family protein 35A1 protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 446 EVELVGARKGRNVAHGPLWRALLDKM 369
           EV + GA K  ++AH PL+R L  +M
Sbjct: 55  EVFVKGANKYADIAHAPLFRELRQEM 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,111,936
Number of Sequences: 27780
Number of extensions: 198159
Number of successful extensions: 622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)