Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1087
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.71 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 384 RSPQWPVSYIPAFPSSYQFNFPKTT 458
           +S  W +  +PA+ ++Y+ +FP  T
Sbjct: 197 KSGTWDIINVPAYLNTYKGDFPTET 221


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 148 ASCIPHPWSTLHRMATLISSRRGLLHMLRISLLHHTC 258
           A+C+   W+ ++ +  L  +   LL  LRI L   TC
Sbjct: 103 ATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTC 139


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 148 ASCIPHPWSTLHRMATLISSRRGLLHMLRISLLHHTC 258
           A+C+   W+ ++ +  L  +   LL  LRI L   TC
Sbjct: 156 ATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTC 192


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 161 LTLGLLYTVWLHSFHQEEVCCT 226
           L   +LY ++L++    EV CT
Sbjct: 681 LARSVLYKIYLNTMESHEVRCT 702


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 297 LLSWLRPPTVSSIPLISQPIAYS 365
           LL+ + PPT  +IPL+ + + ++
Sbjct: 297 LLAEIIPPTSLAIPLLGKYLLFT 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,226
Number of Sequences: 438
Number of extensions: 2425
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)