Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1087
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36810.1 68415.m04514 expressed protein                             30   0.90 
At1g62150.1 68414.m07011 mitochondrial transcription termination...    29   1.2  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    29   2.1  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    28   2.7  
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    27   6.3  

>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 149 RRASLTLGLLYTVWLHSFHQEEVCCT---CCVYRSCIIPAISPVVATTYHGKTPLLASTS 319
           +R  LT+GL+Y   L +F   +             CI+  + P +   +H K PLL  T+
Sbjct: 95  QRCFLTVGLVYPEDLFTFLLNKCKLKEDPLTFGALCILKHLLPRLFEAWHSKRPLLVDTA 154

Query: 320 YSFFDSFNLA 349
            S  D  +LA
Sbjct: 155 SSLLDEQSLA 164


>At1g62150.1 68414.m07011 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 463

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = +3

Query: 300 LSWLRPPTVSSIPLISQPIAYSAHFIKKRSP------QWPVSYIPAFPSSYQFNFPKTT 458
           L + R   V  +  + Q I YSA  +KK++        WP+  I  FP    ++  K T
Sbjct: 345 LGFSRDEFVMMVKCLPQCIGYSAEMVKKKTEFVVKKMNWPLKVITLFPQVLGYSMEKRT 403


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +3

Query: 264 LPS*QPPTTVKLLSWLRPPTVSSIPLISQPIAYSAHFIKKRSPQWPVSYIPAFPSSYQFN 443
           +PS  P    K  S + P   +S P  SQP   S    +      P+S+ PA   S+  +
Sbjct: 142 VPSVSPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKSSSPISHTPALSPSHATS 201

Query: 444 FPKTTP*P 467
               TP P
Sbjct: 202 HSPATPSP 209


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 148 LLASLLIVVDPGETTVVRDVTGGVK---KTPGSAAATANKAHTINLNRRPR 5
           +LAS    V      V+ DV  G+K    T  S A+ A +A T+   R+P+
Sbjct: 147 VLASTKAEVVASTEPVIGDVNSGIKAKLSTAASPASNAKQASTVKTKRQPK 197


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 267 PS*QPPTTVKLLSWLRPPTVSSIPLISQP 353
           P+ QPP   K     +PPT S  P +SQP
Sbjct: 502 PASQPPAASKSFPISQPPTTSK-PFVSQP 529



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 264 LPS*QPPTTVKLLSWLRPPTVSSIPLISQPIAYSAHFIKKRSPQWPVSYIPAFPSSYQFN 443
           +P  QPPTT K L   +PP        SQP A S+      SP  PV     F S+  F 
Sbjct: 536 MPVSQPPTTSKPLPVSQPPPTFQSTCPSQPPAASSSL----SPLPPV-----FNSTQSFQ 586

Query: 444 FP--KTTP 461
            P   TTP
Sbjct: 587 SPPVSTTP 594


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,697,566
Number of Sequences: 28952
Number of extensions: 189001
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)