Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1086
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.35 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.81 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.81 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   3.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   5.7  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.0 bits (52), Expect = 0.35
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 99  PRPVSPEKAEVRRFPPDQKKKKKTVRGRSSRR 4
           P P  P K EV +   D +K    V GR+ R+
Sbjct: 173 PSPTLPSKEEVSKKIDDNQKVGYVVEGRNYRK 204


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 318 LGGLRIVCRPRGLVVVAPTTAIRRP 244
           L GL  +  P G+V+ +P+T++  P
Sbjct: 687 LSGLSSLTSPGGMVLPSPSTSVASP 711


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 318 LGGLRIVCRPRGLVVVAPTTAIRRP 244
           L GL  +  P G+V+ +P+T++  P
Sbjct: 579 LSGLSSLTSPGGMVLPSPSTSVASP 603


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 342 KTHSNRRHLGGLRIVCRPRGLVV 274
           K  S+RRH   L+  CR R + V
Sbjct: 256 KRQSSRRHRKNLKDPCRRRQMYV 278


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 163 ETELKTRQRGESEAFSAEHIFPITLPLGTPDGG 261
           ++E   R++  S   +A  + P +LP  +P GG
Sbjct: 177 DSECFDRRKFISALVNAPSVSPASLPSISPSGG 209


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 111 DSDIPRPVSPEKAEVRRFPPDQKKKKKTVR 22
           D D P+     + E      + KKKKKT++
Sbjct: 241 DKDKPKIEDVGEDEDEDTKKEDKKKKKTIK 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,932
Number of Sequences: 336
Number of extensions: 2621
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)