Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1086
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 0.62
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S... 27 1.4
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 1.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 3.3
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 25 4.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 7.7
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 25 7.7
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 0.62
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 128 PVAQQPTSKPRMRQNSRQ--GKGGKVKRLVRSTSFPSPSPSGRRMAVVGATTTSPLGRQT 301
PV P + P ++ ++ G V L+ S S P SP R V+ ++SPL +
Sbjct: 884 PVHHYPFATPPSQRANKYPLNNGANVPALLNSFSSPQLSPLVNR--VLNEPSSSPLSSSS 941
Query: 302 IRSP 313
++SP
Sbjct: 942 LKSP 945
>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 1.4
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +1
Query: 115 LTKTSCRSTTNVQTSHETELKTRQRGESEAFSA-EHIFP-ITLPLGTPDGGRRRHDHQPS 288
+T TT ++H+ L TRQ E S E P +PL DGG D
Sbjct: 86 VTLDYANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRARDGGVLERDGHTE 145
Query: 289 RSADYSKPA*MAPV 330
+ D K A + PV
Sbjct: 146 AAVDLCKLAGLPPV 159
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 157 SHETELKTRQRGESEAFSAEHIFPITLPLGTPDGGRR 267
S +T +K RG++ AF H+F + P+ D R
Sbjct: 407 SSDTTVKLWSRGDAGAFECLHVFSFSSPVNCIDWNLR 443
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 134 AQQPTSKPRMRQNSRQGKGGKVKRLVRSTSFPSPSPSG 247
++QPT RQ S + + +R S PS PSG
Sbjct: 746 SKQPTEGQHARQESLPSQQTTETKHLRKESIPSKQPSG 783
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 103 VRVELTKTSCRSTTNVQTSHETELK 177
+ E+ KTS +T T HET +K
Sbjct: 195 ILAEMNKTSSSNTVKYDTQHETYMK 219
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +1
Query: 157 SHETELKTRQRGESEAFSAEHIFPITLPLGTPDGGRRRHDHQPSRSA 297
SHE+E K ++ H F + LG R D Q R++
Sbjct: 796 SHESEYKLNNTPSEQSVKVSHFFEFNMKLGEVTLILCREDSQTKRNS 842
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 212 RSTSFPSPSPSGRRMAVVGATTTSPLGRQTIRSPPRWRRL 331
R S S SG A A+T SP+ + +PP+ RRL
Sbjct: 194 RRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPRRL 233
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 118 TKTSCRSTTNVQTSHETELKTRQRGESEAFSAEHI 222
T S + + T T KTR+R AFS+E +
Sbjct: 302 TDLSAKESLTSSTRLSTSYKTRKRSSGVAFSSETV 336
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 109 VELTKTSCRSTTNVQTSHETELKTRQRGESEAFSAEHIFPIT 234
VE+T TSC + T+ T TE + S S+ P T
Sbjct: 70 VEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPST 111
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 137 QQPTSKPRMRQNSRQGKGGKVKR 205
+Q T ++N R+ KGG VKR
Sbjct: 882 EQKTQHTNPQENRRRDKGGSVKR 904
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 60 FPPDQKKKKKTVRGRSSRR 4
+PP +K KK +G+SS+R
Sbjct: 80 YPPPEKPKKAHGKGKSSKR 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,110
Number of Sequences: 5004
Number of extensions: 40928
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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