Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1086
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1963| Best HMM Match : rve (HMM E-Value=0.022)                      30   1.1  
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   1.5  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)                    29   2.6  
SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)                 28   3.4  
SB_9862| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)               28   4.5  
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_26326| Best HMM Match : DUF605 (HMM E-Value=2.2e-35)                27   5.9  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_38662| Best HMM Match : HC2 (HMM E-Value=0.75)                      27   7.8  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              27   7.8  
SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
          Length = 931

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
 Frame = +2

Query: 65  RTSAFSGDTGRGMSESN*LKPPVAQQPTSKPRMRQNSRQGKGGKVKRLVRSTSFPSPSPS 244
           R    S +T    S +   K     +    PR R     G+GG  + + RS   P P P+
Sbjct: 120 RVDEASSETSSVASSNTSSKSGTPSRKVKAPRKRSTGNAGRGGASQSVRRSRVDPEP-PA 178

Query: 245 G---RRMAVVG-----ATTTSPLGRQTIR 307
           G   RR A V       TT  P GR+  R
Sbjct: 179 GFRKRRRATVPFYSSVCTTAEPDGRRERR 207


>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 343

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 80  SGDTGRGMSESN*LKPPVAQQPTSKPRMRQNSRQGKGGKVKRLVRSTSFPSPSPSGR-RM 256
           S   G  M ++    PPV       PR+R  +R   G +  ++   T   SP  S + R 
Sbjct: 172 SARAGSSMDKARARSPPVDSARARSPRVRHQARYHSGQRQSQIPPGTRARSPVDSAKARP 231

Query: 257 AVVGATTTSPLGRQTIRSPP 316
            V  A    P  ++ I+  P
Sbjct: 232 PVDSARARYPRRQRHIKKLP 251


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +2

Query: 50  SGGNRRTSAFSGDTGRGMSESN*LKPPVAQQPTSKPRMRQNSRQGKGGKVKRLVRSTSFP 229
           +G    TSA S  T R  S +    P  +    S  R    S    G  +     +TS  
Sbjct: 89  TGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITLRTSTTSVM 148

Query: 230 SPSPSGRRMAVVGATTTS 283
           + +PS   ++  G+TTT+
Sbjct: 149 TTTPSTTSISRAGSTTTT 166


>SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)
          Length = 314

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 169 ELKTRQRGESEAFSAEHIFPITLPLGTPDGGRRRHDH 279
           EL T  RG++   S E    I  PLG+P+ G R  +H
Sbjct: 269 ELGTSYRGKTPRHSEEVSKIIVSPLGSPEKGWRHKEH 305


>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 53  GGNRRTSAFSGDTGRGMSESN*LKPPVAQQPTSKPRMRQ 169
           GGN ++    G++  GMS S  L  P++Q+ T K R+ +
Sbjct: 252 GGNPKSVTIFGESAGGMSVSLHLLSPLSQEITGKGRVNK 290


>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
          Length = 399

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = +2

Query: 122 KPPVAQQPTSKPRMRQNSRQGKGGKV---KRLVRSTSFPSPSPSGRRMAVVGATTTSPLG 292
           KPP+   P  K      S   K  ++   K+ + + S+P+P+P  R         T P  
Sbjct: 179 KPPLPSLPPKKKISNDTSNDAKFDEIIDDKKPMSAKSYPAPAPPPRPCPAPRVRKTIPSS 238

Query: 293 RQTIRSPPR 319
             ++  P R
Sbjct: 239 TDSLPRPGR 247


>SB_9862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 115 LTKTSCRSTTNVQTSHETELKTRQRGESEAFSAEHIFPITLPLGTPDGGRRRHDHQPSRS 294
           L K +C S   V           +   S  +SAEH+  +TL     + GRRR   +  + 
Sbjct: 86  LEKRTCSSRERVNYIRMKYKLAERDYNSRKYSAEHLLDLTLAKQEREKGRRRKKERKEKY 145

Query: 295 AD 300
           A+
Sbjct: 146 AN 147


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 225 SHHPPPRDAGWRSSAPRPPA 284
           S++ PPR+   R  APRPPA
Sbjct: 322 SYNLPPREPSGRRRAPRPPA 341


>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
          Length = 358

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 227 PSPSPSGRRMAVVGATTTSPLGRQTIRSPP 316
           PSP+PS    A + +T+ SPL R  + S P
Sbjct: 109 PSPTPSSPDTAHIDSTSISPLLRDLLASNP 138


>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 120 SQFDSDIPRPVSPEKAEVRRFPPDQKKKKKTVRGRSSRRV 1
           SQ D   P P+    + VR      KKKKKT+  ++  R+
Sbjct: 38  SQLDGPQPHPLPHPPSSVREKKTSMKKKKKTMTQKTIDRL 77


>SB_26326| Best HMM Match : DUF605 (HMM E-Value=2.2e-35)
          Length = 229

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 41  FFWSGGNRRTSAFSGDTGRGMSESN*LKPPVAQ--QPTSKPRMRQNSRQGKGGKVKRLVR 214
           F W+    R + F+ +  +    ++ +   +AQ  + T +  MRQ   + K   + + ++
Sbjct: 93  FLWADTEDRAARFNKNVIKSFYTASLIYDTLAQFGELTDEAAMRQKYSKWKATYINKCLK 152

Query: 215 STSFPSPSPSG 247
             + P+P P G
Sbjct: 153 EGATPTPGPPG 163


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 316  RRASNSLPTERAGGRGADDRHPASRGGG 233
            R  S + P+ R GGR     HP+SR GG
Sbjct: 1366 RMKSLAHPSRRNGGRMKSLAHPSSRNGG 1393



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 316  RRASNSLPTERAGGRGADDRHPASRGGG 233
            R  S + P+ R GGR     HP+SR GG
Sbjct: 1506 RMKSLAHPSSRKGGRMKTLAHPSSRNGG 1533


>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 50  SGGNRRTSAFSGDTGRGMSESN*LKP--PVAQQPTSKPRMRQNSRQ 181
           S GN  T   +G T    +     +P  P A QPT KP+  Q ++Q
Sbjct: 362 SSGNSYTGPTAGPTAAATAAGTPPQPTQPQASQPTMKPQDTQQAQQ 407


>SB_38662| Best HMM Match : HC2 (HMM E-Value=0.75)
          Length = 280

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 134 AQQPTSKPRMRQNSRQGKGGKVKRLVRSTSFPS--PSPSGRRMAV 262
           + + +S+   R +SR+G GG+     RSTS  S    PS R+ +V
Sbjct: 38  SSRSSSRSVSRSSSRRGSGGRRTSSSRSTSVSSHRTRPSSRKTSV 82


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 258 RSSAPRPPALSVGRLFEARLDGAG*NEFLLHVLIY*VFSTFRLLSQVFWPRGTRELRY*F 437
           R +AP+ P+ ++G     R D AG    +     Y   S+  +  Q    RG R  +Y  
Sbjct: 670 RGTAPQMPSTTIG----GRHDQAGGGGGIPPNAYYGHLSSLNIADQ----RG-RAHQYQL 720

Query: 438 FRGPPLEKPG 467
           F GPP++ PG
Sbjct: 721 FEGPPMQSPG 730


>SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 328 PAPSRRASNSLPTERAGGRGAD 263
           P+P++ + NS PT+R+  +G+D
Sbjct: 3   PSPTKSSPNSTPTKRSTSQGSD 24


>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 137 QQPTSKPRMRQNSRQGKGGKVKRLVRSTSFPSPSPS 244
           + P S PR+ +  R+  GG   +  R+T   SP PS
Sbjct: 530 ESPRSSPRLERPHRRHAGGGAIKAKRNTRRLSPVPS 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,177
Number of Sequences: 59808
Number of extensions: 360281
Number of successful extensions: 1261
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)