Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1086
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    27   9.0  

>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical
           protein F20D12.2 protein.
          Length = 1116

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +1

Query: 244 GTPDGGRRRHDHQPSRSADYSKPA*MAPVRMSFCFTY*YIESFRRSDYLARFFGRGEP 417
           GTPDG   R+ +      D    A +  V  S          F R D +  FFGR +P
Sbjct: 118 GTPDGSENRNTNFQKNLNDIKSEAPLGKVNFS---------QFGRKDEIKSFFGRAKP 166


>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 155 PRMRQNSRQGKGGKVKRLVRSTSF----PSPSPSGRRMAVVGATTTSPLGRQTIRS 310
           PR+ + S   K    KRL+RST F        PS +R  + G     P  +Q I S
Sbjct: 246 PRVTELSHDQKKVLFKRLIRSTKFEEFLAKKWPSEKRFGLEGCEVLIPAMKQVIDS 301


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 136 STTNVQTSHETELKTRQRGESEAFSAEHIFPITLPLGTPDGGRRRHD 276
           S  NVQ     E K ++  E E  SAE  F  +L   T D  R RH+
Sbjct: 235 SVENVQKGETEEEKRKRLSEEERLSAE--FLASLDQKTIDADRLRHN 279


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 215  STS-FPSPSPSGRRM-AVVGATTTSPLGRQTIRSPP 316
            STS FP P  +   + A +GATT S  G  ++  PP
Sbjct: 2299 STSIFPMPPTAAESVGAAIGATTASMFGGISVADPP 2334


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 280 GGRGADDR-HPASRGGG*W 227
           GGRG D R  P S GGG W
Sbjct: 139 GGRGGDGRGPPGSNGGGDW 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,359
Number of Sequences: 27780
Number of extensions: 263301
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)