Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1086
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 143 PTSKPRMRQNSRQGKGGKVKRLVRSTS 223
           P SK    +  RQG G  VKR  R  S
Sbjct: 430 PRSKKNKLKKPRQGDGAAVKRKSREGS 456


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 253 DGGRRRHDHQPSRSADYSK 309
           D  RR HD+ PS  +D+S+
Sbjct: 115 DYDRRLHDNSPSFLSDHSR 133


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 67  DFRLFWGYWAG 99
           +++L+W YW G
Sbjct: 566 NYKLYWRYWQG 576


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 143 PTSKP--RMRQNSRQGKGGKVKRLVRSTSFPSPS 238
           P  +P   ++Q  +  +GGK+ RL++     +P+
Sbjct: 655 PLDEPAVHIKQEGQSPEGGKLTRLIKRELVDAPA 688


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 387 VIGTSKRLNILIREAKTHSNRRHLGGLRIVCRPRGLVVVAPTTAIRRPEGEGDGKDVL 214
           V+ T   LN+  R   TH   R +  + I   PR L++  P    ++ E E + ++V+
Sbjct: 314 VVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRFLLIERP----KKDEDEEEEEEVV 367


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 255 IRRPEGEGDGKDVLRTKRFTFPP 187
           + R +G  DGK ++       PP
Sbjct: 216 VERKDGNADGKTLIEALDAILPP 238


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 98  GMSESN*LKPPVAQQPTSKPRMR 166
           G S+ +   PP    P  K RMR
Sbjct: 375 GRSQKSTTGPPPGPTPAQKARMR 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,425
Number of Sequences: 438
Number of extensions: 3429
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)