Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1086
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19140.2 68414.m02381 expressed protein                             31   0.52 
At1g19140.1 68414.m02380 expressed protein                             31   0.52 
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    29   2.1  
At4g29790.1 68417.m04242 expressed protein                             29   2.1  
At5g33806.1 68418.m04019 hypothetical protein                          27   4.8  
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein         27   4.8  
At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    27   4.8  
At1g49270.1 68414.m05524 protein kinase family protein contains ...    27   4.8  
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family...    27   6.4  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    27   8.5  
At3g21430.1 68416.m02704 expressed protein                             27   8.5  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   8.5  

>At1g19140.2 68414.m02381 expressed protein
          Length = 312

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 209 VRSTSFPSPSPSGRRMAVVGATTTSPLGRQTI 304
           +RST  PS   SG   + +G  T SP+G+Q++
Sbjct: 26  LRSTIIPSSYTSGLCTSSIGGNTESPMGKQSV 57


>At1g19140.1 68414.m02380 expressed protein
          Length = 311

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 209 VRSTSFPSPSPSGRRMAVVGATTTSPLGRQTI 304
           +RST  PS   SG   + +G  T SP+G+Q++
Sbjct: 26  LRSTIIPSSYTSGLCTSSIGGNTESPMGKQSV 57


>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 215 STSFPSPSPSGRRMAVVGATTTSPLGRQTIRSPPR 319
           +T+ PSP  +  R + +G+T +SP  R  + SP R
Sbjct: 39  TTNRPSPINNAMRNSAIGSTKSSPPMRSPLTSPNR 73


>At4g29790.1 68417.m04242 expressed protein
          Length = 1211

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +1

Query: 109  VELTKTSCRSTTNVQTSHETELKTRQRGESEAFSAEHIFPITLPLGTPD 255
            VE T+TS   TTN   S  + L+T    ESE     H+  I   LG PD
Sbjct: 1123 VEQTRTSLSKTTNSNNSEYSNLETLD--ESEPLDLSHL-QIPDGLGGPD 1168


>At5g33806.1 68418.m04019 hypothetical protein
          Length = 336

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 176 RQGKGGKVKRLVRSTSFPSPSPSGRRMAVVGATTTSPLGRQTIRSPPRW 322
           R+G+ G+  R  RS    SP PS R          +PL R  +  P RW
Sbjct: 150 REGRSGRSPRRDRSPCCDSPRPSSRDGTNQRLELIAPLDR--LLHPDRW 196


>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 
          Length = 937

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 237 PPRDAGWRSSAPRPP 281
           PPR AG+R S P PP
Sbjct: 43  PPRTAGYRRSGPSPP 57


>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 339 THSNRRHLGGLRIVCRPRGLVVVAPTTAI 253
           +HS+  H+GGL +    RGL  + P T I
Sbjct: 53  SHSHMDHIGGLPMYVATRGLYKMKPPTII 81


>At1g49270.1 68414.m05524 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 699

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 213 GAHLSHHPPPRDAGWRSSAPRPPALS 290
           G+  S  PPP D+  +S +P PP+ S
Sbjct: 74  GSSSSSPPPPSDSSSQSQSPPPPSTS 99


>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 561

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +2

Query: 95  RGMSESN*LKPPVAQQPTSKPRMRQNSRQGKGGKVKRLVRSTSFPSPSPSGRRMAVVGAT 274
           +G S+ N   PP    P   P  R  SR       K  V S +   P+P  +    VG  
Sbjct: 384 KGKSKKNNSNPP-PPPPPPPPERRYESRASTSKLRKAPVESRT-SKPNPPAKVTQYVGTG 441

Query: 275 TTSPLGRQTIRSPP 316
           + SPL    I  PP
Sbjct: 442 SESPL--MPIPPPP 453


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 213 GAHLSHHPPP--RDAGWRSSAPRPPALSVG 296
           G HLS+ PPP     G  S+ P PP +  G
Sbjct: 203 GGHLSNGPPPSGMPGGPLSNGPPPPMMGPG 232


>At3g21430.1 68416.m02704 expressed protein 
          Length = 961

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 184 QRGESEAFSAEHIFPITLPLGTPDGGRRRHDHQPSRSADYSKP 312
           Q+G+      EH   + L   +  GG  ++ H P+R A    P
Sbjct: 36  QKGDDTDDDMEHEIALALAEASQRGGSTKNSHTPNRKAKMYPP 78


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 230 SPSPSGRRMAVVGATTTSPLGRQTIRSPPRWRRL 331
           SPSP  R     GA   SP   Q + SPP  +RL
Sbjct: 427 SPSPVARLRDPTGARLPSPSIEQRLPSPPVAQRL 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,252,555
Number of Sequences: 28952
Number of extensions: 260155
Number of successful extensions: 851
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)