Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1084
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0167 - 26104527-26104567,26105130-26105226,26105377-261054...    29   1.1  
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    28   2.6  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    28   3.5  
10_07_0160 - 13656172-13656476,13656799-13657528                       27   6.0  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    27   6.0  
12_02_0955 - 24761373-24761464,24763564-24763771                       27   8.0  

>05_06_0167 -
           26104527-26104567,26105130-26105226,26105377-26105415,
           26105628-26105678,26105978-26106059,26106222-26106282,
           26106380-26106509,26106630-26106758,26107057-26107314
          Length = 295

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 408 PNPASPQKLKPLAAAKGESTTGDRVHQKSVRRQGKCC 298
           P P SP++ +PL +A+   T G R      RR  + C
Sbjct: 25  PIPCSPRRTRPLVSARFARTAGRRSRSTGGRRDLRSC 61


>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
            3384640-3384709,3385878-3386002,3387128-3387268,
            3387362-3387519,3387644-3387803,3390136-3390213,
            3390326-3390385,3390473-3390528,3391886-3392090,
            3394107-3394192,3394296-3394406,3394536-3394607,
            3395453-3395538,3395730-3395878,3396107-3396250,
            3396335-3396442,3396997-3397027,3397609-3397713,
            3398283-3398407,3398807-3398950,3399073-3399177,
            3400748-3400799,3401549-3401696,3401936-3402130,
            3402404-3402647,3403152-3403259,3403887-3404034,
            3405467-3405525,3405876-3405945,3407008-3407333,
            3407666-3409204,3410526-3410733,3410870-3410906,
            3411024-3411072,3411143-3411271
          Length = 2025

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 278  GSRMTTNSTVLCPPLIEEELKLRE*P 201
            G     N +  CPP+I+EE+KL E P
Sbjct: 1755 GDSPNWNLSFGCPPIIKEEMKLNEEP 1780


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +2

Query: 86  GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 199
           G +     T   L+W+ P+WL   W M  AA N+    AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452


>10_07_0160 - 13656172-13656476,13656799-13657528
          Length = 344

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 182 TATPLPEVTHEASALPLSAADTELCYW 262
           TA  LP   H +S  PLSA  T + YW
Sbjct: 15  TALSLPFPLHASSVDPLSAGATTVRYW 41


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 122 LSWYSPVWLWPMAALN 169
           L+W SP+W WP    N
Sbjct: 773 LNWPSPIWFWPSFTKN 788


>12_02_0955 - 24761373-24761464,24763564-24763771
          Length = 99

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 152 PMAALNLQWDTATPLPEVTHEASALPLSAADT 247
           P  A +L WDTA P     H  SALP+ A ++
Sbjct: 12  PNCATDLPWDTAAPR---DHLDSALPVRATES 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,746
Number of Sequences: 37544
Number of extensions: 198841
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)