Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1084
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.023
SB_56244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012)               27   4.7  
SB_19682| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)                   27   8.2  

>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 188 TPLPEVT-HEASALPLSAADTELCYWWS---FWIPRWPFWRQHFPW 313
           TPLP  T H  +  P    DT + YW +   +W P  P+W  + P+
Sbjct: 29  TPLPYWTPHSLTRHPYPLLDTHIPYWTAHIPYWTPYLPYWTPYLPY 74


>SB_56244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 408 PNPASPQKLKPLAAAKGESTTGDRVHQKSVRRQ 310
           P P SP+++  L     EST GDR+H+  + RQ
Sbjct: 22  PAPVSPERVDVLVL---ESTYGDRLHENRLNRQ 51


>SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012)
          Length = 1119

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 408 PNPASPQKLKPLAAAKGESTTGDRVHQK 325
           P P++P+  +P+   K ES + DRV +K
Sbjct: 198 PKPSAPKPEEPVILFKHESKSSDRVDEK 225


>SB_19682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 260 WWSFWIPRWPFW 295
           WWSF+   W FW
Sbjct: 318 WWSFFRKHWAFW 329


>SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)
          Length = 124

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 414 PNPNPASPQKLKPLAAAKGESTTG 343
           P+P P SPQ+ K  A  +G   TG
Sbjct: 21  PSPEPESPQQKKKKARRRGPRLTG 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,661
Number of Sequences: 59808
Number of extensions: 192066
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)